RetrogeneDB ID: | retro_cfam_790 | ||
Retrocopylocation | Organism: | Dog (Canis familiaris) | |
Coordinates: | 18:10024741..10025052(+) | ||
Located in intron of: | ENSCAFG00000030906 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | AP3S1 | ||
Ensembl ID: | ENSCAFG00000000203 | ||
Aliases: | None | ||
Description: | adaptor-related protein complex 3, sigma 1 subunit [Source:HGNC Symbol;Acc:2013] |
Percent Identity: | 88.57 % |
Parental protein coverage: | 53.89 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | MIKAILIFNNHGKPRLSKFYQPY-SEDTQQQIIRETFHLVSKRDENVCNFLEGGLLIGGSDNKLIYRHYA |
MIKAIL.FNNHGKPRLSK.YQP..SEDTQQ.I.RETFHLV.KRD.NVCNFL.GGLLIGGSDNKL.YRHYA | |
Retrocopy | MIKAILSFNNHGKPRLSKSYQPT<SEDTQQHISRETFHLVAKRDGNVCNFLDGGLLIGGSDNKLMYRHYA |
Parental | TLYFVFCVDSSESELGILDLIQVFVETLDKCFENV |
TLYFVFCVD.SESELGILDLIQVFVE.LDKCFENV | |
Retrocopy | TLYFVFCVDYSESELGILDLIQVFVEILDKCFENV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012049_cerebellum | 0 .42 RPM | 22 .60 RPM |
SRP017611_brain | 0 .48 RPM | 30 .01 RPM |
SRP017611_kidney | 0 .07 RPM | 10 .50 RPM |
SRP017611_liver | 0 .22 RPM | 6 .09 RPM |