RetrogeneDB ID: | retro_ggor_467 | ||
Retrocopylocation | Organism: | Gorilla (Gorilla gorilla) | |
Coordinates: | 1:194627281..194627860(-) | ||
Located in intron of: | ENSGGOG00000000957 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | AP3S1 | ||
Ensembl ID: | ENSGGOG00000016895 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 94.82 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MIKAILIFNNHGKPQLSKFYQPYSEDTQQQIIRETFHLVSKRDENVCNFLEGGLLIGGSDNKLIYRHYAT |
MIK.ILIFNNHGKP.LSKFYQPYSEDTQQ.IIRETFHLVSKRDENVCNFLEGGLLIGG.DNKLIYRHY.T | |
Retrocopy | MIKEILIFNNHGKPRLSKFYQPYSEDTQQEIIRETFHLVSKRDENVCNFLEGGLLIGGFDNKLIYRHYTT |
Parental | LYFVFCVDSSESELGILDLIQVFVETLDKCFENVCELDLIFHVDKVHNILAEMVMGGMVLETNMNEIVTQ |
LYFVFCVDSSESELGILDLIQVFVETLDKCFENVCELDLIFHVDKVH.ILAE.VMGGMVLETNMNEIVTQ | |
Retrocopy | LYFVFCVDSSESELGILDLIQVFVETLDKCFENVCELDLIFHVDKVHSILAEIVMGGMVLETNMNEIVTQ |
Parental | IDAQNKLEKSEAGLAGAPARAVSAVKNMNLPEIPRNINIGDISIKVPNLPSFK |
IDAQNKLEKSEAGL.GAPA.AVSAVKNMNLPEIP.NINIGDISIKVPNLPSFK | |
Retrocopy | IDAQNKLEKSEAGLVGAPACAVSAVKNMNLPEIPSNINIGDISIKVPNLPSFK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 1 .10 RPM | 18 .03 RPM |
SRP007412_cerebellum | 0 .55 RPM | 12 .41 RPM |
SRP007412_heart | 0 .06 RPM | 1 .84 RPM |
SRP007412_kidney | 0 .08 RPM | 11 .29 RPM |
SRP007412_liver | 0 .29 RPM | 10 .00 RPM |
SRP007412_testis | 0 .93 RPM | 30 .67 RPM |