Parental gene:

AP3S1, ENSPPYG00000015700

Aliases:None
Description:adaptor-related protein complex 3, sigma 1 subunit [Source:HGNC Symbol;Acc:2013]
Organism:Orangutan (Pongo abelii)
Coordinates:5:116915821..116988471(+)


>ENSPPYG00000015700
ATGTGTTTCTCCGCGACTACGGACCTCGGGAGAGGAGCGGTGGGCAACGTGTCCGTGCTGGGTCGAATGCGCACACTCCC
GTTAGGCCGCTGGCTCGGACCTAGAAATGTTTCCGCTTTCCTTAGTGCCTGCCCCGCCCAGGCCCCGCCCCTTGGGCCCC
GCCCGGCGGCTCGGGAGCGCGCGCGGGCGCGTGCGGGAGGGGGCGGGTGGGGAAGGATCGCAGGCGAGATTACGAGGCGA
GGCTTGCGCGCCCGCCCCCGCCCTGGCCCCCAGTGCCCACCCGGTCGGCCCGGCACAGCCATGATCAAGGCGATCCTAAT
CTTCAACAACCACGGGAAGCCGCGGCTCTCCAAGTTCTACCAGCCCTACAGTGAAGATACACAACAGCAAATCATCAGGG
AGACTTTCCATTTGGTATCTAAGAGAGATGAAAATGTTTGTAATTTCCTAGAAGGAGGATTATTGATTGGAGGATCTGAC
AACAAACTGATTTATAGACATTATGCAACGTTATATTTTGTCTTCTGTGTGGATTCTTCAGAAAGTGAACTTGGCATTTT
AGATCTAATTCAAGTATTTGTGGAAACATTAGACAAATGTTTTGAAAATGTCTGTGAACTGGATTTGATTTTCCATGTAG
ACAAGGTTCACAATATTCTTGCAGAAATGGTGATGGGGGGAATGGTATTGGAGACAAATATGAATGAGATTGTTACACAA
ATTGATGCACAAAATAAGTTGGAAAAATCTGAGGCTGGCTTAGCAGGAGCTCCAGCCCGTGCTGTATCAGCTGTAAAGAA
TATGAATCTTCCTGAGATCCCAAGAAATATTAACATTGGTGACATCAGTATAAAAGTGCCAAACCTGCCCTCTTTTAAAT
AA

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 22 .72 RPM
SRP007412_cerebellum 25 .66 RPM
SRP007412_heart 6 .65 RPM
SRP007412_kidney 14 .05 RPM
SRP007412_liver 11 .17 RPM



Species Parental gene accession Homology type Retrogenes number
Canis familiaris ENSCAFG00000000203 ortholog_one2one 1 retrogene
retro_cfam_790,
Callithrix jacchus ENSCJAG00000016767 ortholog_one2one 1 retrogene
retro_cjac_1143,
Cavia porcellus ENSCPOG00000007192 ortholog_one2one 3 retrogenes
retro_cpor_1528, retro_cpor_551, retro_cpor_779,
Felis catus ENSFCAG00000029920 ortholog_one2one 3 retrogenes
retro_fcat_1434, retro_fcat_151, retro_fcat_680,
Homo sapiens ENSG00000177879 ortholog_one2one 3 retrogenes
retro_hsap_1084, retro_hsap_3563, retro_hsap_507,
Gorilla gorilla ENSGGOG00000016895 ortholog_one2one 2 retrogenes
retro_ggor_467, retro_ggor_856,
Loxodonta africana ENSLAFG00000015311 ortholog_one2many 1 retrogene
retro_lafr_12,
Macropus eugenii ENSMEUG00000010623 ortholog_one2one 1 retrogene
retro_meug_969,
Microcebus murinus ENSMICG00000006157 ortholog_one2one 4 retrogenes
retro_mmur_1154, retro_mmur_399, retro_mmur_436, retro_mmur_851,
Myotis lucifugus ENSMLUG00000002769 ortholog_one2one 2 retrogenes
retro_mluc_1872, retro_mluc_504,
Macaca mulatta ENSMMUG00000015288 ortholog_one2one 2 retrogenes
retro_mmul_1821, retro_mmul_843,
Mustela putorius furo ENSMPUG00000000782 ortholog_one2many 1 retrogene
retro_mputfur_1372,
Mus musculus ENSMUSG00000024480 ortholog_one2one 4 retrogenes
retro_mmus_1541, retro_mmus_3155, retro_mmus_3177, retro_mmus_3599,
Otolemur garnettii ENSOGAG00000032376 ortholog_one2one 1 retrogene
retro_ogar_1005,
Ochotona princeps ENSOPRG00000009176 ortholog_one2one 2 retrogenes
retro_opri_1040, retro_opri_750,
Pan troglodytes ENSPTRG00000017155 ortholog_one2one 5 retrogenes
retro_ptro_1119, retro_ptro_2113, retro_ptro_2420, retro_ptro_379, retro_ptro_736,
Pteropus vampyrus ENSPVAG00000006575 ortholog_one2one 3 retrogenes
retro_pvam_1196, retro_pvam_1232, retro_pvam_422,
Rattus norvegicus ENSRNOG00000003829 ortholog_one2one 1 retrogene
retro_rnor_1460,
Sarcophilus harrisii ENSSHAG00000001176 ortholog_one2one 2 retrogenes
retro_shar_143, retro_shar_267,
Ictidomys tridecemlineatus ENSSTOG00000011759 ortholog_one2one 1 retrogene
retro_itri_862,
Tupaia belangeri ENSTBEG00000004775 ortholog_one2one 7 retrogenes
retro_tbel_1449, retro_tbel_154, retro_tbel_1662, retro_tbel_2402, retro_tbel_2641, retro_tbel_3400, retro_tbel_4179,
Tarsius syrichta ENSTSYG00000013231 ortholog_one2one 9 retrogenes
retro_tsyr_1099, retro_tsyr_1234, retro_tsyr_1354, retro_tsyr_1431, retro_tsyr_1862, retro_tsyr_1960, retro_tsyr_58, retro_tsyr_941, retro_tsyr_949,
Tursiops truncatus ENSTTRG00000000813 ortholog_one2one 3 retrogenes
retro_ttru_1048, retro_ttru_1183, retro_ttru_145,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_pabe_232 89.90 67.58
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2. retro_pabe_233 90.75 77.47
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Download FASTA sequences of all ENSPPYG00000015700 retrocopies