RetrogeneDB ID: | retro_shar_267 | ||
Retrocopylocation | Organism: | Tasmanian devil (Sarcophilus harrisii) | |
Coordinates: | GL838276.1:40051..40460(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | AP3S1 | ||
Ensembl ID: | ENSSHAG00000001176 | ||
Aliases: | None | ||
Description: | adaptor-related protein complex 3, sigma 1 subunit [Source:HGNC Symbol;Acc:2013] |
Percent Identity: | 61.27 % |
Parental protein coverage: | 69.85 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 3 |
Parental | NFLEGGLLIGGSDNKLIYRHYATLYFVFCVDSSESELGILDLIQVFVETLD-KCFENVCELDLIFHVDKV |
.FLE..LLI.GSDNK.IYRH...LY..F.VD.SE.....LDL.QVF.E.LD....EN..E....F.V.KV | |
Retrocopy | SFLE--LLISGSDNKMIYRHHVVLYSIFIVDPSEIKHIFLDLRQVFMESLD<LSLENISEW-ILFYVIKV |
Parental | HNILAEMVMGGMVLETNMNEIVTQIDAQNKLEKSEAGLAGA-PARAVSAVKNMNLPEIP-RNINIGDISI |
H.IL.EMV..GMVL..NMNEI...ID..NKLEK.EA.LAG..PA.AVS..KN.NL.EIP...INIGDISI | |
Retrocopy | HYILEEMVVKGMVLKINMNEIDILIDS*NKLEKYEAVLAGI>PA*AVSTIKNINLSEIP>KSINIGDISI |
Parental | KV |
KV | |
Retrocopy | KV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |