RetrogeneDB ID: | retro_tbel_2641 | ||
Retrocopylocation | Organism: | Treeshrew (Tupaia belangeri) | |
Coordinates: | scaffold_114989:4118..4619(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | AP3S1 | ||
Ensembl ID: | ENSTBEG00000004775 | ||
Aliases: | None | ||
Description: | adaptor-related protein complex 3, sigma 1 subunit [Source:HGNC Symbol;Acc:2013] |
Percent Identity: | 91.62 % |
Parental protein coverage: | 98.22 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | SEDTQQQIIRETFHLVSKRDENVCNFLEGGLLIGGSDNKLIYRHYATLYFVFCVDSSESELGILDLIQVF |
SEDTQQQIIRETFHLVSKRDENVCNFLEG.LLI.GSDNKL.YRHYATLYFVFCV.SSESELGILDLIQVF | |
Retrocopy | SEDTQQQIIRETFHLVSKRDENVCNFLEGELLIRGSDNKLKYRHYATLYFVFCVESSESELGILDLIQVF |
Parental | VETLDKCFENVCELDLIFHVDKVHNILAEMVMGGMVLE-NMNEIVTQIDAQNKLEKSEAGLAGAPARAVS |
V.TLDKCFENVCELDLIFHVDKVHNILAEMVMGGMVLE.NMNEIV.QIDAQNK..K.EAGL.GAPA..VS | |
Retrocopy | VKTLDKCFENVCELDLIFHVDKVHNILAEMVMGGMVLETNMNEIVMQIDAQNKQVKPEAGLVGAPAHTVS |
Parental | AVKNMNLPEIPRNINIGDISIKVPNLP |
AVKNMNLPEIPRNINIGDI.IKVPNLP | |
Retrocopy | AVKNMNLPEIPRNINIGDINIKVPNLP |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |