RetrogeneDB ID: | retro_chof_1056 | ||
Retrocopylocation | Organism: | Sloth (Choloepus hoffmanni) | |
Coordinates: | scaffold_191075:314..759(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS2 | ||
Ensembl ID: | ENSCHOG00000012360 | ||
Aliases: | None | ||
Description: | ribosomal protein S2 [Source:HGNC Symbol;Acc:10404] |
Percent Identity: | 61.18 % |
Parental protein coverage: | 74.26 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | LGVKCSKEVATAIRGAIILAKLSIVPVRRGYWGNKIGKPHTVPCKVTVRCGSVLVRLIPAPRGTGIVSAP |
LGV.CSKEVAT...GAIILAK.SI..V.R...GNK..K.HT.PCKVT....S.LV.LI..PR.T.IV... | |
Retrocopy | LGVECSKEVATTVHGAIILAKCSIITVCRD*CGNKVRKSHTFPCKVTRDWDSMLVCLIHVPRDTSIVLTS |
Parental | VPKKLLMMA-GIDDCYTSARGCTATLGNFAKAT-FDAISKTYSYLTPDLWKETVFTKSPYQEFTDHLVKT |
..KKLL....GID.C.....G...TLG...KAT..DAISKT.SYL.P.L.KET...KSP.QEFT.HLVKT | |
Retrocopy | KAKKLLLLM<GIDHCFIWP-GLHNTLGKLPKAT<LDAISKTSSYLSPNLCKETSLPKSPSQEFTAHLVKT |
Parental | HTRVSVQRTQAP |
HTRVSVQ.TQ.P | |
Retrocopy | HTRVSVQVTQTP |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Anolis carolinensis | ENSACAG00000002549 | 1 retrocopy | |
Choloepus hoffmanni | ENSCHOG00000012360 | 9 retrocopies |
retro_chof_1056 , retro_chof_2398, retro_chof_2545, retro_chof_2607, retro_chof_368, retro_chof_378, retro_chof_535, retro_chof_919, retro_chof_989,
|
Monodelphis domestica | ENSMODG00000016077 | 1 retrocopy | |
Sarcophilus harrisii | ENSSHAG00000015213 | 5 retrocopies | |
Sus scrofa | ENSSSCG00000022859 | 8 retrocopies |