RetrogeneDB ID: | retro_sscr_280 | ||
Retrocopylocation | Organism: | Pig (Sus scrofa) | |
Coordinates: | 11:34047439..34047807(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSSSCG00000009447 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSSSCG00000022859 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 78.23 % |
Parental protein coverage: | 66.85 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | GNKIGKPHTVPCKVTGRCGSVLVR-LIPAPRGTGIVSAPVPKKLLMMAGIDDCYTSARGCTATLGNFAKA |
GNK.GKP.T..C.VT..CGS..V..LIPAP.GTGI.SA.VPKK.L.MA.IDDC.TSARGCTATLGNFAK. | |
Retrocopy | GNKMGKPDTAHCEVTALCGSRCVA<LIPAPKGTGISSAFVPKKILKMARIDDCCTSARGCTATLGNFAKD |
Parental | TFDAISKTYSYLTPDLWKETVFTKSPYQEFTDHLVKTHTRVSVQRTQAPAVATT |
TFDAISK.YSYLT.DL.KETVFTK.PY..FTDHL.KTHTRVSVQRTQA.AVATT | |
Retrocopy | TFDAISKIYSYLTSDLRKETVFTKAPYRNFTDHLGKTHTRVSVQRTQAQAVATT |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP014902_placenta | 0 .00 RPM | 0 .27 RPM |
SRP014902_testis | 0 .00 RPM | 0 .00 RPM |
SRP018288_heart | 0 .00 RPM | 0 .50 RPM |
SRP018288_kidney | 0 .00 RPM | 0 .49 RPM |
SRP018288_liver | 0 .00 RPM | 0 .32 RPM |
SRP018288_lung | 0 .00 RPM | 0 .31 RPM |
SRP018856_adipose | 0 .00 RPM | 0 .48 RPM |
SRP035408_brain | 0 .00 RPM | 0 .06 RPM |
SRP035408_liver | 0 .00 RPM | 0 .00 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Anolis carolinensis | ENSACAG00000002549 | 1 retrocopy | |
Choloepus hoffmanni | ENSCHOG00000012360 | 9 retrocopies | |
Macropus eugenii | ENSMEUG00000004508 | 2 retrocopies | |
Monodelphis domestica | ENSMODG00000016077 | 1 retrocopy | |
Sarcophilus harrisii | ENSSHAG00000015213 | 5 retrocopies | |
Sus scrofa | ENSSSCG00000022859 | 8 retrocopies |
retro_sscr_280 , retro_sscr_293, retro_sscr_412, retro_sscr_486, retro_sscr_729, retro_sscr_803, retro_sscr_950, retro_sscr_951,
|