RetrogeneDB ID: | retro_chof_2398 | ||
Retrocopylocation | Organism: | Sloth (Choloepus hoffmanni) | |
Coordinates: | scaffold_71449:3741..4268(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS2 | ||
Ensembl ID: | ENSCHOG00000012360 | ||
Aliases: | None | ||
Description: | ribosomal protein S2 [Source:HGNC Symbol;Acc:10404] |
Percent Identity: | 60.89 % |
Parental protein coverage: | 87.13 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 3 |
Parental | EIIDFFLETSLKDEVLKIMPVQKQTRAGQRTR-FKAFVAI-GDYNGHVGLGVKCSKEVATAIRGAIILAK |
...DF.LETS.K..VLKIMPVQ.Q..AG..TR.FKAFVA..G.YNGH.GLGVKCSK.V.T.I.G.I.L.K | |
Retrocopy | QMVDFSLETSIKVKVLKIMPVQMQNHAG*WTR>FKAFVAT<GNYNGHNGLGVKCSKKVVTIIHGTISLDK |
Parental | LSIVPVRRGYWGNKIGKPHTVPCKVTVRCGSVLVRLIPAPRGTGIVSAPVPKKLLMMAGIDDCYTSARGC |
L.IVPV......NK.GK.HTV..K.T....SVL...IPA.RG..I...P..KKLL....IDD.YT.ARGC | |
Retrocopy | LCIVPVQQDC*ENKNGKSHTVTYKATGC*FSVLGSRIPARRGPIIIWTPMHKKLLLLPDIDDYYTPARGC |
Parental | TAT-LGNFAKATFDAISKTYSYLTPDLWKETVFTKSPYQ |
.AT.LGN.AKAT.D.ISK.Y.Y.TP.LW.E.V.TKS.YQ | |
Retrocopy | LAT<LGNSAKATTDTISKNYRYVTPNLWEEIVSTKSTYQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Anolis carolinensis | ENSACAG00000002549 | 1 retrocopy | |
Choloepus hoffmanni | ENSCHOG00000012360 | 9 retrocopies |
retro_chof_1056, retro_chof_2398 , retro_chof_2545, retro_chof_2607, retro_chof_368, retro_chof_378, retro_chof_535, retro_chof_919, retro_chof_989,
|
Monodelphis domestica | ENSMODG00000016077 | 1 retrocopy | |
Sarcophilus harrisii | ENSSHAG00000015213 | 5 retrocopies | |
Sus scrofa | ENSSSCG00000022859 | 8 retrocopies |