RetrogeneDB ID: | retro_chof_378 | ||
Retrocopylocation | Organism: | Sloth (Choloepus hoffmanni) | |
Coordinates: | scaffold_101731:4107..4482(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS2 | ||
Ensembl ID: | ENSCHOG00000012360 | ||
Aliases: | None | ||
Description: | ribosomal protein S2 [Source:HGNC Symbol;Acc:10404] |
Percent Identity: | 58.91 % |
Parental protein coverage: | 62.38 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 3 |
Parental | PVRRGYWGNKIGKPHTVPCKVTVRCGSVLVRLIPAPRGTGIVSAPVPKKLLMM-AGIDDCYT-SARGCTA |
PV...Y.GNKIGKPH..PCKVT....S.LV.LI..PRGTGIVS...PKKLL.M..GI..CY...A..C.. | |
Retrocopy | PVCLDYKGNKIGKPHSFPCKVTGHWDSMLVCLIHVPRGTGIVSTSRPKKLLLM<GGIEHCYI<LAGACMD |
Parental | TLGNFAKAT-FDAISKTYSYLTPDLWKETVFTKSPYQEFTDHLVKTHTRVSVQRTQAPA |
TLG...K.T..D.IS.T.SYL...L.K.T.FT.SP..EFTDHLVKT.TRV.VQR...P. | |
Retrocopy | TLGSYLKTT<LDTISNTNSYLFHNLCKGT*FTNSPSWEFTDHLVKTNTRVFVQRA*VPS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Anolis carolinensis | ENSACAG00000002549 | 1 retrocopy | |
Choloepus hoffmanni | ENSCHOG00000012360 | 9 retrocopies |
retro_chof_1056, retro_chof_2398, retro_chof_2545, retro_chof_2607, retro_chof_368, retro_chof_378 , retro_chof_535, retro_chof_919, retro_chof_989,
|
Monodelphis domestica | ENSMODG00000016077 | 1 retrocopy | |
Sarcophilus harrisii | ENSSHAG00000015213 | 5 retrocopies | |
Sus scrofa | ENSSSCG00000022859 | 8 retrocopies |