RetrogeneDB ID: | retro_chof_368 | ||
Retrocopylocation | Organism: | Sloth (Choloepus hoffmanni) | |
Coordinates: | scaffold_100592:370..825(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS2 | ||
Ensembl ID: | ENSCHOG00000012360 | ||
Aliases: | None | ||
Description: | ribosomal protein S2 [Source:HGNC Symbol;Acc:10404] |
Percent Identity: | 63.69 % |
Parental protein coverage: | 75.74 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 4 |
Parental | HVGLGVKCSKEVATAIRGAI-ILAKLSIVPVRRGYWG-NKIGKPHTVPCKVTVRCGSVLV-RLIPAPRGT |
H.GLGVKCSKEVATA...A..I.A.LS.VPV..GYWG......PH.VPCKVT..CGS.L..RLIP...GT | |
Retrocopy | HQGLGVKCSKEVATAMHVAV<IPATLSFVPVWQGYWG<SQTSEPHAVPCKVTGCCGSGLS<RLIPTANGT |
Parental | GIVSAPVPKKLLMMAGIDDCYTSARGCTATL-GNFAKATFDAISKTYSYLTPDLWKETVFTKSPYQEFTD |
..V.APVPKKLL..A.ID...T.ARGC..T..GNF.K.TF..ISK.YSYLTP.L.KET.FTKSP.QEFT. | |
Retrocopy | DSVLAPVPKKLLLTASIDHGCTWARGCMTTQ<GNFSKSTFEVISKNYSYLTPHL*KETEFTKSPSQEFTC |
Parental | HLVKTHTRVSVQRTQAP |
HLVK.H.RV..QR...P | |
Retrocopy | HLVKAHIRVFMQRS*TP |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Anolis carolinensis | ENSACAG00000002549 | 1 retrocopy | |
Choloepus hoffmanni | ENSCHOG00000012360 | 9 retrocopies |
retro_chof_1056, retro_chof_2398, retro_chof_2545, retro_chof_2607, retro_chof_368 , retro_chof_378, retro_chof_535, retro_chof_919, retro_chof_989,
|
Monodelphis domestica | ENSMODG00000016077 | 1 retrocopy | |
Sarcophilus harrisii | ENSSHAG00000015213 | 5 retrocopies | |
Sus scrofa | ENSSSCG00000022859 | 8 retrocopies |