RetrogeneDB ID: | retro_sscr_951 | ||
Retrocopylocation | Organism: | Pig (Sus scrofa) | |
Coordinates: | 7:105041690..105041968(-) | ||
Located in intron of: | ENSSSCG00000025984 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSSSCG00000022859 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 59.79 % |
Parental protein coverage: | 52.17 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | APRGTGIVSAPVPKKLLMMAGIDDCYTSARGCTATLGNFAKATFDAISKTYSYLTP-DLWKETVFTKSPY |
.PR......APV.KKL...A.I.D.Y....GCTA.L.NF.K.TF.AISKT.SYL....L..ET.FTKSPY | |
Retrocopy | SPRPQTLALAPVLKKLT--ASINDSYILSGGCTASLCNFTKVTFGAISKTHSYLIS<NL*TETMFTKSPY |
Parental | QEFTDHLVKTHTRVSVQRTQAPAVATT |
QEFTD..VK.HTRVS...TQAPA..TT | |
Retrocopy | QEFTDQMVKSHTRVSA-KTQAPAMVTT |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP014902_placenta | 0 .00 RPM | 0 .27 RPM |
SRP014902_testis | 0 .00 RPM | 0 .00 RPM |
SRP018288_heart | 0 .00 RPM | 0 .50 RPM |
SRP018288_kidney | 0 .00 RPM | 0 .49 RPM |
SRP018288_liver | 0 .00 RPM | 0 .32 RPM |
SRP018288_lung | 0 .00 RPM | 0 .31 RPM |
SRP018856_adipose | 0 .00 RPM | 0 .48 RPM |
SRP035408_brain | 0 .00 RPM | 0 .06 RPM |
SRP035408_liver | 0 .00 RPM | 0 .00 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Anolis carolinensis | ENSACAG00000002549 | 1 retrocopy | |
Choloepus hoffmanni | ENSCHOG00000012360 | 9 retrocopies | |
Macropus eugenii | ENSMEUG00000004508 | 2 retrocopies | |
Monodelphis domestica | ENSMODG00000016077 | 1 retrocopy | |
Sarcophilus harrisii | ENSSHAG00000015213 | 5 retrocopies | |
Sus scrofa | ENSSSCG00000022859 | 8 retrocopies |
retro_sscr_280, retro_sscr_293, retro_sscr_412, retro_sscr_486, retro_sscr_729, retro_sscr_803, retro_sscr_950, retro_sscr_951 ,
|