RetrogeneDB ID: | retro_chof_1789 | ||
Retrocopylocation | Organism: | Sloth (Choloepus hoffmanni) | |
Coordinates: | scaffold_384481:24..480(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | TPM1 | ||
Ensembl ID: | ENSCHOG00000012788 | ||
Aliases: | None | ||
Description: | tropomyosin 1 (alpha) [Source:HGNC Symbol;Acc:12010] |
Percent Identity: | 78.29 % |
Parental protein coverage: | 74.38 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | AEADVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAADESERGMKVIESRAQKDEEKMEIQEIQLKE |
AEA.VASLN.RIQLVEEELD.AQERLATA.QKLEEAEKAADESERGMKVIE.R..KDEEKME.QEIQLKE | |
Retrocopy | AEAEVASLNCRIQLVEEELDHAQERLATAVQKLEEAEKAADESERGMKVIENRGLKDEEKMELQEIQLKE |
Parental | AKHIAEDADRKYEEVARKL-IIESDLERAEERAELSEGKCAELEEELKTVTNNLKSLEAQAEKYSQKEDK |
AKHIAE.ADRKYEEVA.KL.IIE.DLER.EERAEL.E..C.E..E.......NLK.L....EKYSQKEDK | |
Retrocopy | AKHIAEEADRKYEEVAPKLVIIEGDLERTEERAELAESHCQEMDEQIRLMDQNLKCLSVAEEKYSQKEDK |
Parental | YEEEIKVLSDKL |
YEEEIK.L.DKL | |
Retrocopy | YEEEIKILTDKL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000016966 | 1 retrocopy | |
Choloepus hoffmanni | ENSCHOG00000012788 | 11 retrocopies |
retro_chof_1194, retro_chof_1272, retro_chof_1360, retro_chof_1789 , retro_chof_1829, retro_chof_2309, retro_chof_346, retro_chof_399, retro_chof_412, retro_chof_770, retro_chof_967,
|
Callithrix jacchus | ENSCJAG00000004355 | 2 retrocopies | |
Macropus eugenii | ENSMEUG00000014581 | 2 retrocopies | |
Pongo abelii | ENSPPYG00000006534 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000018184 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000009955 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000003762 | 1 retrocopy | |
Vicugna pacos | ENSVPAG00000003277 | 1 retrocopy |