Parental gene:

TPM1, ENSPPYG00000006534

Aliases:None
Description:tropomyosin 1 (alpha) [Source:HGNC Symbol;Acc:12010]
Organism:Orangutan (Pongo abelii)
Coordinates:15:60023705..60047950(+)


>ENSPPYG00000006534
ATGGACGCCATCAAGAAGAAGATGCAGATGCTGAAGCTCGACAAGGAGAACGCGTTGGATCGAGCTGAGCAGGCGGAGGC
AGACAAGAAGGCGGCGGAAGACAGGAGCAAGCAGCTCGAGGAGGACATCGCGGCCAAGGAGAAGTTGCTGCGGGTGTCGG
AGGACGAGCGGGACCGGGTGCTGGAGGAGCTGCACAAGGCGGAGGACAGCCTCCTGGCCGCCGAAGAGGCCGCCGCCAAG
CTGGAAGATGAGCTGGTGTCACTGCAAAAGAAACTCAAGGGCACCGAAGATGAACTGGACAAATACTCTGAGGCTCTCAA
AGATGCCCAGGAGAAGCTGGAGCTGGCAGAGAAAAAGGCCACCGACGCTGAAGCCGATGTAGCTTCTCTGAACAGACGCA
TCCAGCTGGTTGAGGAAGAGTTGGATCGTGCCCAGGAGCGTCTGGCAACAGCTTTGCAGAAGCTGGAGGAAGCTGAGAAG
GCAGCAGATGAGAGTGAGAGAGGCATGAAAGTCATTGAGAGTCGAGCCCAAAAAGATGAAGAAAAAATGGAAATTCAGGA
GATCCAACTGAAAGAGGCCAAGCACATTGCTGAAGATGCCGACCGCAAATATGAAGAGGTGGCCCGTAAGCTGGTCATCA
TTGAGAGCGACCTGGAACGTGCAGAGGAGCGGGCTGAGCTCTCAGAAGGCAAATGTGCCGAGCTTGAAGAAGAATTGAAA
ACTGTGACGAACAACTTGAAGTCACTGGAGGCTCAGGCTGAGAAGTACTCGCAGAAGGAAGACAAATATGAGGAAGAGAT
CAAGGTCCTTTCCGACAAGCTGAAGGAGGCTGAGACTCGAGCTGAGTTTGCGGAGAGGTCAGTAACTAAATTGGAGAAAA
GCATTGATGACTTAGAAGAGAAAGTGGCTCATGCCAAAGAAGAAAACCTTAGTATGCATCAGATGCTGGATCAGACTTTA
CTGGAGTTAAACAACATGTGA

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 49 .54 RPM
SRP007412_cerebellum 52 .77 RPM
SRP007412_heart 2870 .97 RPM
SRP007412_kidney 51 .21 RPM
SRP007412_liver 56 .25 RPM



Species Parental gene accession Homology type Retrogenes number
Canis familiaris ENSCAFG00000016966 ortholog_one2one 1 retrogene
retro_cfam_2167,
Choloepus hoffmanni ENSCHOG00000012788 ortholog_one2one 11 retrogenes
retro_chof_1194, retro_chof_1272, retro_chof_1360, retro_chof_1789, retro_chof_1829, retro_chof_2309, retro_chof_346, retro_chof_399, retro_chof_412, retro_chof_770, retro_chof_967,
Callithrix jacchus ENSCJAG00000004355 ortholog_one2one 2 retrogenes
retro_cjac_2200, retro_cjac_691,
Macropus eugenii ENSMEUG00000014581 ortholog_one2one 2 retrogenes
retro_meug_1944, retro_meug_2161,
Pongo abelii ENSPPYG00000000787 within_species_paralog 2 retrogenes
retro_pabe_1230, retro_pabe_3263,
Ictidomys tridecemlineatus ENSSTOG00000009955 ortholog_one2one 1 retrogene
retro_itri_166,
Tursiops truncatus ENSTTRG00000003762 ortholog_one2one 1 retrogene
retro_ttru_446,
Vicugna pacos ENSVPAG00000003277 ortholog_one2one 1 retrogene
retro_vpac_424,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_pabe_624 60.92 71.47
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Download FASTA sequences of all ENSPPYG00000006534 retrocopies