RetrogeneDB ID: | retro_cjac_178 | ||
Retrocopylocation | Organism: | Marmoset (Callithrix jacchus) | |
Coordinates: | X:123820427..123821291(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSCJAG00000023311 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | E2F6 | ||
Ensembl ID: | ENSCJAG00000006910 | ||
Aliases: | None | ||
Description: | E2F transcription factor 6 [Source:HGNC Symbol;Acc:3120] |
Percent Identity: | 52.33 % |
Parental protein coverage: | 91.81 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MSQQRPARKLPSLLLDPAEETVRRRCRDPINVEGLLPSKIRINLEDNVQYVSMRKALKVKRPRFDVSLVY |
MSQQ.P...LP.L..D.AEE.V.R...D....E..LPS.IR.N...N.Q..S..K...VK.P....SL.. | |
Retrocopy | MSQQQPEENLPNLPMDLAEEAVCRQ--DATSAECPLPSTIRDNFR-NAQPESKIKTVNVK-PQREASLAC |
Parental | LTRKFMDLVRSAPGGILDLNKVATKLGVRKRRVYDITNVLDGIELVEKKSKNHIRWIGSDLSNFGAVPQQ |
LTRKF.D..R.APGG...L...A.KL.V.KRR.YDITNVL.G..L.EK..KNHIRWIG.DL.N..A.P.. | |
Retrocopy | LTRKFVDILRFAPGGVVNLKEAAAKLAVQKRRIYDITNVLLGVKLIEKSAKNHIRWIGPDL-NPAATPEE |
Parental | KKLQEELSDLSAMEDALDELIKDCAQQLFALTDDKENGRLAYVTYQDIHSIQAFHEQIVIAVKAPAETRL |
KKLQEEL..LSA.EDALD.LI.DC.QQL..LTDDKE...LAYVTY...H....F.EQIV...KAP..T.L | |
Retrocopy | KKLQEELCKLSATEDALDGLINDCTQQLNELTDDKEMKKLAYVTYEEVHRSELFQEQIVFVIKAPVGTSL |
Parental | DVPAPREDSITVHIRSTKGPIDVYLCEVEQAQTGNKRAEGVGTSSSES |
.V...R.D...........PI.V.LC.V......N...EG.GTSS... | |
Retrocopy | EVSGSR-DPFLLRLHNPNEPINVCLC-VSKEDAANDTSEGAGTSSESA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP051959_colon | 0 .00 RPM | 5 .57 RPM |
SRP051959_heart | 0 .00 RPM | 9 .98 RPM |
SRP051959_kidney | 0 .00 RPM | 7 .90 RPM |
SRP051959_liver | 0 .00 RPM | 3 .83 RPM |
SRP051959_lung | 0 .00 RPM | 7 .34 RPM |
SRP051959_lymph_node | 0 .00 RPM | 7 .47 RPM |
SRP051959_skeletal_muscle | 0 .00 RPM | 11 .44 RPM |
SRP051959_spleen | 0 .00 RPM | 8 .40 RPM |
Species | RetrogeneDB ID |
---|---|
Pongo abelii | retro_pabe_1 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000048286 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000006910 | 1 retrocopy |
retro_cjac_178 ,
|
Dasypus novemcinctus | ENSDNOG00000000258 | 1 retrocopy | |
Homo sapiens | ENSG00000169016 | 4 retrocopies | |
Macropus eugenii | ENSMEUG00000007957 | 4 retrocopies | |
Myotis lucifugus | ENSMLUG00000003384 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000023225 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000014134 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000012646 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000011661 | 2 retrocopies | |
Ictidomys tridecemlineatus | ENSSTOG00000003316 | 1 retrocopy |