Parental gene: | E2F6, ENSPTRG00000011661 |
| Aliases: | None |
| Description: | Pan troglodytes E2F transcription factor 6 (E2F6), mRNA. [Source:RefSeq mRNA;Acc:NM_001242344] |
| Organism: | Chimpanzee (Pan troglodytes) |
| Coordinates: | 2A:11555842..11577652(-) |
>ENSPTRG00000011661
ATGAGTCAGCAGCGGCCGGCGAGGAAGTTACCCAGTCTCCTCCTGGACCCGACGGAGGAGACGGTTCGCCGTCGGTGCCG
AGACCCCATCAACGTGGAGGGCCTGCTGCCATCAAAAATAAGGATTAATTTAGAAGATAATGTACAATATGTGTCCATGA
GAAAAGCTCTAAAAGTGAAGAGACCTCGTTTTGATGTATCACTGGTTTATTTAACTCGAAAATTTATGGATCTTGTCAGA
TCTGCTCCCGGGGGTATTCTTGACTTAAACAAGGTTGCAACGAAACTGGGAGTCCGAAAGCGGAGAGTGTATGACATCAC
CAATGTCTTAGATGGAATCGACCTCGTTGAAAAGAAATCCAAGAACCATATTAGATGGATAGGATCTGATCTTAGCAATT
TTGGAGCAGTTCCCCAACAAAAGAAGCTACAGGAGGAACTTTCTGACTTATCAGCAATGGAAGATGCTTTGGATGAGTTA
ATTAAGGATTGTGCTCAGCAGCTGTTTGAGTTAACAGATGACAAAGAAAATGAAAGACTAGCATATGTGACCTATCAAGA
CATTCATAGCATTCAGGCCTTCCATGAACAGATCGTCATTGCAGTTAAAGCTCCAGCAGAAACCAGATTGGATGTTCCAG
CTCCCAGAGAAGACTCTATCACAGTGCACATAAGGAGCACCAACGGACCTATCGATGTCTATTTGTGTGAAGTGGAGCAG
GGTCAGACCAGTAACAAAAGGTCTGAAGGTGTCGGGACCTCTTCATCTGAGAGCACTCATCCAGAAGGCCCTGAGGAAGA
AGAAAATCCTCAGCAAAGTGAAGAATTGCTTGAAGTAAGCAACTGA
ATGAGTCAGCAGCGGCCGGCGAGGAAGTTACCCAGTCTCCTCCTGGACCCGACGGAGGAGACGGTTCGCCGTCGGTGCCG
AGACCCCATCAACGTGGAGGGCCTGCTGCCATCAAAAATAAGGATTAATTTAGAAGATAATGTACAATATGTGTCCATGA
GAAAAGCTCTAAAAGTGAAGAGACCTCGTTTTGATGTATCACTGGTTTATTTAACTCGAAAATTTATGGATCTTGTCAGA
TCTGCTCCCGGGGGTATTCTTGACTTAAACAAGGTTGCAACGAAACTGGGAGTCCGAAAGCGGAGAGTGTATGACATCAC
CAATGTCTTAGATGGAATCGACCTCGTTGAAAAGAAATCCAAGAACCATATTAGATGGATAGGATCTGATCTTAGCAATT
TTGGAGCAGTTCCCCAACAAAAGAAGCTACAGGAGGAACTTTCTGACTTATCAGCAATGGAAGATGCTTTGGATGAGTTA
ATTAAGGATTGTGCTCAGCAGCTGTTTGAGTTAACAGATGACAAAGAAAATGAAAGACTAGCATATGTGACCTATCAAGA
CATTCATAGCATTCAGGCCTTCCATGAACAGATCGTCATTGCAGTTAAAGCTCCAGCAGAAACCAGATTGGATGTTCCAG
CTCCCAGAGAAGACTCTATCACAGTGCACATAAGGAGCACCAACGGACCTATCGATGTCTATTTGTGTGAAGTGGAGCAG
GGTCAGACCAGTAACAAAAGGTCTGAAGGTGTCGGGACCTCTTCATCTGAGAGCACTCATCCAGAAGGCCCTGAGGAAGA
AGAAAATCCTCAGCAAAGTGAAGAATTGCTTGAAGTAAGCAACTGA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP007412_brain_prefrontal_cortex | 11 .30 RPM |
| SRP007412_cerebellum | 8 .60 RPM |
| SRP007412_heart | 10 .75 RPM |
| SRP007412_kidney | 7 .40 RPM |
| SRP007412_liver | 5 .30 RPM |
| SRP007412_testis | 6 .22 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Bos taurus | ENSBTAG00000048286 | ortholog_one2one | 1 retrogene | |
| Callithrix jacchus | ENSCJAG00000006910 | ortholog_one2one | 1 retrogene | |
| Dasypus novemcinctus | ENSDNOG00000000258 | ortholog_one2one | 1 retrogene | |
| Homo sapiens | ENSG00000169016 | ortholog_one2one | 4 retrogenes | |
| Macropus eugenii | ENSMEUG00000007957 | ortholog_one2one | 4 retrogenes | |
| Myotis lucifugus | ENSMLUG00000003384 | ortholog_one2many | 1 retrogene | |
| Macaca mulatta | ENSMMUG00000023225 | ortholog_one2one | 1 retrogene | |
| Nomascus leucogenys | ENSNLEG00000014134 | ortholog_one2one | 1 retrogene | |
| Pongo abelii | ENSPPYG00000012646 | ortholog_one2one | 1 retrogene | |
| Pan troglodytes | ENSPTRG00000023584 | within_species_paralog | 2 retrogenes | |
| Ictidomys tridecemlineatus | ENSSTOG00000003316 | ortholog_one2one | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_ptro_1484 | 98.51 | 71.89 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_ptro_3272 | 52.13 | 74.73 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSPTRG00000011661 retrocopies