RetrogeneDB ID: retro_mluc_864

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429780:10180077..10180789(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSMLUG00000003384
• Aliases: None
• Description: None

Sequence

>retro_mluc_864
ATTGATTTAGAAGATAATGTACAAGCTGTGCACATGAGAAAAGCTCCAAAATGGAAGAGATCTCATTTTGATTCATCACT
ATTTCTTATAACGAGAAAATTTATGGATCTTGTCAGAAATGCTTCTGTGGATATTGACTTAATCAAGATTTCAACAAAAC
TGGGGGTACCAAAACGAAGATTATATGACATCAGCAATATCTTAAGTGGCACTGACCTGGTTGAAAAAATATCTAAGAAC
CATATTATATGGATAAGATTTTATATCACCAATTTTAAGCATTGCCCCAATAGAAAAAACTGCAGGAGGAACTTTATGGC
ATATCAGCAATGGAAGATGCCCTGGATGAGTTAATTAAGGATTGTGATCAGCAGTTGTTTGAGTTAATAGATGGCAAGGA
GAATGAAGGACTAGCATATGTGACATATCAAGATATTCAGAGCATTCAAGCATTCCATGAACAGATTGTTATTGTACCTA
AAGCTCCAGCAGAAATCAGACTGGATGTTCCAGCTCCCAGAGAAGACTCTGTCAGGTAAGTATACGGAGCACCAGAGGGC
CCATTGATGTCTATTTGTTTGAAGTGAAACAGGATCACGCAAGTAATAAGGTGTCTGAAGGTGTAGGAATCTCATTATCT
AAAAGCAAACACTCAGAAAACCCTGATAAAGAAAATCCTCCACAGAAAAGTGAATAATTGCTTGAAGTGAGC

Alignment

ORF - retro_mluc_864 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 67.76 %
• Parental protein coverage: 88.36 %
• Number of stop codons detected: 2
• Number of frameshifts detected: 2

Retrocopy - Parental Gene Alignment:

Parental  INLEDNVQYVSMRKTLKVKTPRFDVSLVYLTRKFMDLVRNAPGGILDLNKVATKLGVRKRRVYDITNVLD
          I.LEDNVQ.V.MRK..K.K...FD.SL...TRKFMDLVRNA...I.DL.K..TKLGV.KRR.YDI.N.L.
Retrocopy IDLEDNVQAVHMRKAPKWKRSHFDSSLFLITRKFMDLVRNASVDI-DLIKISTKLGVPKRRLYDISNILS

Parental  GIDLVEKKSKNHIRWIGSDLNNFG-AVPQQKKLREELSDLSAMEEALDELIKDCAQQLFELTDDKDNERL
          G.DLVEK.SKNHI.WI.....NF..A.PQ.KKL.EEL...SAME.ALDELIKDC.QQLFEL.D.K.NE.L
Retrocopy GTDLVEKISKNHIIWIRFYITNFK<ALPQ*KKLQEELYGISAMEDALDELIKDCDQQLFELIDGKENEGL

Parental  TLAYVTYQDIHSIRAFHEQIVIAVRAPAETRLDVPAPREDSI-TVHIRSTKGPIDVYLCEVEQGRSGRKG
          ..AYVTYQDI.SI.AFHEQIVI...APAE.RLDVPAPREDS...V.IRST.GPIDVYL.EV.Q.....K.
Retrocopy --AYVTYQDIQSIQAFHEQIVIVPKAPAEIRLDVPAPREDSV<QVSIRSTRGPIDVYLFEVKQDHASNKV

Parental  SEGAGPSASKKSKHSETPDKEENPPQQSEQVCDVS
          SEG.G.S.S.KSKHSE.PDK.ENPPQ.SE....VS
Retrocopy SEGVGISLS-KSKHSENPDK-ENPPQKSE*LLEVS

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_864 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 14 parental genes, and 26 retrocopies.

Species	Parental gene accession	Retrocopies number
Bos taurus	ENSBTAG00000048286	1 retrocopy	retro_btau_1820,
Choloepus hoffmanni	ENSCHOG00000005114	5 retrocopies	retro_chof_1613, retro_chof_2316, retro_chof_2487, retro_chof_2627, retro_chof_537,
Callithrix jacchus	ENSCJAG00000006910	1 retrocopy	retro_cjac_178,
Dasypus novemcinctus	ENSDNOG00000000258	1 retrocopy	retro_dnov_187,
Dipodomys ordii	ENSDORG00000013213	1 retrocopy	retro_dord_369,
Homo sapiens	ENSG00000169016	4 retrocopies	retro_hsap_2542, retro_hsap_2547, retro_hsap_2572, retro_hsap_4906,
Macropus eugenii	ENSMEUG00000007957	4 retrocopies	retro_meug_1169, retro_meug_860, retro_meug_882, retro_meug_893,
Myotis lucifugus	ENSMLUG00000003384	1 retrocopy	retro_mluc_864 ,
Macaca mulatta	ENSMMUG00000023225	1 retrocopy	retro_mmul_87,
Nomascus leucogenys	ENSNLEG00000014134	1 retrocopy	retro_nleu_2351,
Otolemur garnettii	ENSOGAG00000013601	2 retrocopies	retro_ogar_2337, retro_ogar_3080,
Pongo abelii	ENSPPYG00000012646	1 retrocopy	retro_pabe_1,
Pan troglodytes	ENSPTRG00000011661	2 retrocopies	retro_ptro_1484, retro_ptro_3272,
Ictidomys tridecemlineatus	ENSSTOG00000003316	1 retrocopy	retro_itri_135,