RetrogeneDB ID: | retro_cjac_1947 | ||
Retrocopylocation | Organism: | Marmoset (Callithrix jacchus) | |
Coordinates: | 2:112300641..112301097(-) | ||
Located in intron of: | ENSCJAG00000010329 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | C14orf166 | ||
Ensembl ID: | ENSCJAG00000006926 | ||
Aliases: | None | ||
Description: | chromosome 14 open reading frame 166 [Source:HGNC Symbol;Acc:23169] |
Percent Identity: | 81.82 % |
Parental protein coverage: | 61.79 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 2 |
Parental | GDNAEKYKDLVPDNAKTADNATKNAEPLINLDVNNPDFKAGVMALANLLQIQRHDDYLVMLKAIRILVQE |
GDNAEKYKDLVPD.AKTA.NATKN.E.LINLDVNNPDFKAG.MALANLLQIQ.HDDY.V..KAI..L.QE | |
Retrocopy | GDNAEKYKDLVPDHAKTAVNATKNTETLINLDVNNPDFKAGLMALANLLQIQCHDDYMVKVKAICFLAQE |
Parental | RLTQDAVAKANQTKEGLPVALDKHIL-GFDTGDAVLNEAAQILRLLHIEELRELQTKINEAI-VAVQAII |
.LT.DAV.KANQTKEGLP.ALD.H.L.GFDTGDAVLNEAAQIL.LLH.EELREL..KINEAI.VAVQ.II | |
Retrocopy | HLT*DAVTKANQTKEGLPIALDEHLL<GFDTGDAVLNEAAQIL*LLHREELRELPRKINEAI>VAVQTII |
Parental | ADPKTDHRLGKVGR |
AD..TDHRLGKV.R | |
Retrocopy | ADLRTDHRLGKVER |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP051959_colon | 0 .00 RPM | 24 .36 RPM |
SRP051959_heart | 0 .00 RPM | 30 .06 RPM |
SRP051959_kidney | 0 .00 RPM | 29 .71 RPM |
SRP051959_liver | 0 .02 RPM | 27 .27 RPM |
SRP051959_lung | 0 .16 RPM | 24 .45 RPM |
SRP051959_lymph_node | 0 .00 RPM | 24 .15 RPM |
SRP051959_skeletal_muscle | 0 .00 RPM | 41 .69 RPM |
SRP051959_spleen | 0 .00 RPM | 28 .89 RPM |
Species | RetrogeneDB ID |
---|---|
Macaca mulatta | retro_mmul_2025 |