RetrogeneDB ID: | retro_mdom_1296 | ||
Retrocopylocation | Organism: | Opossum (Monodelphis domestica) | |
Coordinates: | 4:340992814..340993282(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | C14orf166 | ||
Ensembl ID: | ENSMODG00000013211 | ||
Aliases: | None | ||
Description: | chromosome 14 open reading frame 166 [Source:HGNC Symbol;Acc:23169] |
Percent Identity: | 88.46 % |
Parental protein coverage: | 63.93 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | VWLEDQKIRHYKIEDRGNLRNIHNSEWPKFFEKYLKDVNCPFKIQERQETIDWLLGLAVRLEYGDNADKY |
VWLED.KIRHYKIEDRGNLRNIHNSEWPKFFEKYLKDVNCPFKIQER.ETIDW.LG.AVRLEYGDNADKY | |
Retrocopy | VWLEDKKIRHYKIEDRGNLRNIHNSEWPKFFEKYLKDVNCPFKIQER*ETIDWILGVAVRLEYGDNADKY |
Parental | KDSTPDNAKNADNAAKNVEPLINLDVNNPDFKAGVMALANLLQIQRHDDYLVMLKAIRILVQERLTQEAV |
KDST.DNAKNADNAAKNVEPLINLDVNNP.FKAGVMALANLLQIQ.HD.YLVMLKAI.ILVQE.LTQEAV | |
Retrocopy | KDSTADNAKNADNAAKNVEPLINLDVNNPNFKAGVMALANLLQIQSHDNYLVMLKAIPILVQEHLTQEAV |
Parental | AKANQTKEGLPVALDK |
.KANQTKE.....L.. | |
Retrocopy | WKANQTKEAMGKELER |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 148 .64 RPM |
SRP007412_cerebellum | 0 .00 RPM | 131 .23 RPM |
SRP007412_heart | 0 .00 RPM | 202 .54 RPM |
SRP007412_kidney | 0 .00 RPM | 138 .27 RPM |
SRP007412_liver | 0 .00 RPM | 144 .50 RPM |
SRP007412_testis | 0 .00 RPM | 95 .07 RPM |