RetrogeneDB ID: | retro_ptro_1631 | ||
Retrocopylocation | Organism: | Chimpanzee (Pan troglodytes) | |
Coordinates: | 2A:112061078..112061810(-) | ||
Located in intron of: | ENSPTRG00000012358 | ||
Retrocopyinformation | Ensembl ID: | ENSPTRG00000039415 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | C14ORF166 | ||
Ensembl ID: | ENSPTRG00000006344 | ||
Aliases: | None | ||
Description: | Pan troglodytes UPF0568 protein C14orf166-like (C14H14orf166), mRNA. [Source:RefSeq mRNA;Acc:NM_001246406] |
Percent Identity: | 90.57 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | MFRRKLTALDYHNPAGFNCKDETEFRNFIVWLEDQKIRHYKIEDRGNLRNIHSSDWPKFFEKYLRDVNCP |
MF..KLTALDYHNPAGFNCKDETEFRNF.VWLEDQKIRHYKIEDRGNLRNIHSSDWP.FF.KYLRDVNC. | |
Retrocopy | MFQCKLTALDYHNPAGFNCKDETEFRNFTVWLEDQKIRHYKIEDRGNLRNIHSSDWPEFFQKYLRDVNCC |
Parental | FKIQDRQEAIDWLLGLAVRLEYGDNAEKYKDLVPDNSKTADNATKNAEPLINLDVNNPDFKAGVMALANL |
.KIQDRQEAIDWLLGLAVR.EYGDNAEKYKDLVPDN.KTADNATKNAE.LINLDVNNPDFK.GVMALANL | |
Retrocopy | LKIQDRQEAIDWLLGLAVRFEYGDNAEKYKDLVPDNAKTADNATKNAERLINLDVNNPDFKPGVMALANL |
Parental | LQIQRHDDYLVMLKAIRILVQERLTQDAVAKANQTKEGLPVALDKHILGFDTGDAVLNEAAQILRLLHIE |
LQ.Q.HDD.LVMLKAI.ILVQE.LTQDAVAKANQTKEGLPVALDKHILGFDTGDAVLNEA.QIL.LLH.E | |
Retrocopy | LQVQCHDDCLVMLKAIQILVQEHLTQDAVAKANQTKEGLPVALDKHILGFDTGDAVLNEATQIL*LLHTE |
Parental | ELRELQTKINEAIVAVQAIIADPKTDHRLGKVGR |
ELR.LQTKINEAI.AVQAIIAD..TDHRLGKVGR | |
Retrocopy | ELRQLQTKINEAIAAVQAIIADARTDHRLGKVGR |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 24 .88 RPM |
SRP007412_cerebellum | 0 .04 RPM | 28 .68 RPM |
SRP007412_heart | 0 .03 RPM | 64 .03 RPM |
SRP007412_kidney | 0 .10 RPM | 56 .91 RPM |
SRP007412_liver | 0 .00 RPM | 40 .49 RPM |
SRP007412_testis | 0 .21 RPM | 79 .14 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_2307 |
Pongo abelii | retro_pabe_1980 |