RetrogeneDB ID: | retro_eeur_366 | ||
Retrocopylocation | Organism: | Hedgehog (Erinaceus europaeus) | |
Coordinates: | scaffold_271931:185..707(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | C14orf166 | ||
Ensembl ID: | ENSEEUG00000015583 | ||
Aliases: | None | ||
Description: | chromosome 14 open reading frame 166 [Source:HGNC Symbol;Acc:23169] |
Percent Identity: | 90.8 % |
Parental protein coverage: | 71.78 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MFRRKLTALDYHNPAGFNCKDETEFRNFIVWLEDQKIRHYKIEERGNLRNIHSNDWPKFFEKYLRDVNCP |
MF.RKLTALDYHNPAGFNCKDETEFRNFIVWLEDQKIRHYKIE.RGNLRNIHSNDWPKFFEKYLRDVNCP | |
Retrocopy | MFQRKLTALDYHNPAGFNCKDETEFRNFIVWLEDQKIRHYKIEDRGNLRNIHSNDWPKFFEKYLRDVNCP |
Parental | FKIQDRQEAIDWLLGLAVRLEYGDNADKYKTPAPD-ISDNAAKNAEPLINLDVTNPDFKAGVMALANLLQ |
FKIQDR.EAIDWLLGLAVRLEYGDN..KYK..APD...DNAAKNAEP.IN.DVTNPDFKAGVMALANLLQ | |
Retrocopy | FKIQDRREAIDWLLGLAVRLEYGDNTEKYKDSAPDKNTDNAAKNAEPRINSDVTNPDFKAGVMALANLLQ |
Parental | IQRHDDYLVMLKAIRILVQERLTQDAVAKANQIK |
IQRHDDYL.M.KAIRILVQE.LTQDAVAKANQ.K | |
Retrocopy | IQRHDDYLEMPKAIRILVQEHLTQDAVAKANQTK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 12 .73 RPM | 37 .06 RPM |
SRP017611_kidney | 21 .38 RPM | 65 .26 RPM |
SRP017611_liver | 13 .51 RPM | 38 .59 RPM |