RetrogeneDB ID: | retro_cjac_465 | ||
Retrocopylocation | Organism: | Marmoset (Callithrix jacchus) | |
Coordinates: | 1:135583467..135583789(+) | ||
Located in intron of: | ENSCJAG00000008305 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSCJAG00000015560 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 52.21 % |
Parental protein coverage: | 78.83 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 4 |
Parental | SQAVLVDRTVYV-SGQIGMDPSSGQLVSGGVAEEAKQ-ALKNMNEILKAASCDFTNVVKTT-VLLADIND |
.Q...V....YV.SG.I......G...S.G......Q.A..N..EILKAA.CDFTN.VKT..VLLA.IND | |
Retrocopy | AQKTVVSTVNYVFSGTIYISGQ*GMYPSSGSLCQEGQ<AEVNKGEILKAAGCDFTNTVKTS>VLLANIND |
Parental | FNTVNEIYKQYFKSNFP-ARAAYQVAALPKGARI-EIEAVAVQ |
F.TVNEIYKQ.FK..FP..RAA..V...P..A...EI..VAVQ | |
Retrocopy | FSTVNEIYKQHFKISFP<KRAACLV-VFPQEAEL<EIKSVAVQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP051959_colon | 0 .82 RPM | 9 .07 RPM |
SRP051959_heart | 0 .79 RPM | 3 .24 RPM |
SRP051959_kidney | 0 .84 RPM | 76 .01 RPM |
SRP051959_liver | 0 .65 RPM | 77 .89 RPM |
SRP051959_lung | 0 .76 RPM | 5 .11 RPM |
SRP051959_lymph_node | 0 .82 RPM | 4 .52 RPM |
SRP051959_skeletal_muscle | 0 .61 RPM | 5 .22 RPM |
SRP051959_spleen | 0 .74 RPM | 3 .84 RPM |