Parental gene:

ENSCJAG00000015560

Aliases:None
Description:None
Organism:Marmoset (Callithrix jacchus)
Coordinates:16:96426873..96444622(+)


>ENSCJAG00000015560
ATGTCGTCCTTGATCAGAAGGGTGATCAGCTCCGCGAATGCCCTTGGGGCTATTGGATCCTACAGCCAAGCTGTGTTAGT
CGACAGGACCGTTTACGTTTCAGGACAGATAGGCATGGACCCTTCAAGTGGCCAGCTTGTGTCAGGAGGGGTGGCAGAAG
AAGCTAAACAAGCTCTTAAAAACATGAATGAAATTCTGAAAGCTGCAAGCTGTGACTTCACTAATGTGGTGAAAACAACT
GTTCTTCTGGCTGACATAAATGACTTCAATACTGTCAATGAAATCTACAAACAGTATTTCAAGAGTAATTTTCCTGCTAG
AGCTGCTTACCAAGTTGCTGCTTTGCCCAAAGGTGCCCGAATTGAAATTGAAGCAGTAGCTGTCCAAGGACCTCTGACAA
CAGCATCACTATAA

Library Parental gene expression (RPM)
SRP051959_colon 9 .07 RPM
SRP051959_heart 3 .24 RPM
SRP051959_kidney 76 .01 RPM
SRP051959_liver 77 .89 RPM
SRP051959_lung 5 .11 RPM
SRP051959_lymph_node 4 .52 RPM
SRP051959_skeletal_muscle 5 .22 RPM
SRP051959_spleen 3 .84 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000000575 ortholog_one2many 1 retrogene
retro_amel_1033,
Bos taurus ENSBTAG00000012595 ortholog_one2many 5 retrogenes
retro_btau_1068, retro_btau_1145, retro_btau_1328, retro_btau_771, retro_btau_912,
Canis familiaris ENSCAFG00000030250 ortholog_many2many 1 retrogene
retro_cfam_668,
Choloepus hoffmanni ENSCHOG00000001278 ortholog_one2many 8 retrogenes
retro_chof_133, retro_chof_1972, retro_chof_2434, retro_chof_2503, retro_chof_2676, retro_chof_380, retro_chof_515, retro_chof_757,
Dasypus novemcinctus ENSDNOG00000025138 ortholog_one2many 3 retrogenes
retro_dnov_1155, retro_dnov_224, retro_dnov_793,
Dipodomys ordii ENSDORG00000015382 possible_ortholog 2 retrogenes
retro_dord_576, retro_dord_713,
Erinaceus europaeus ENSEEUG00000014805 possible_ortholog 1 retrogene
retro_eeur_256,
Felis catus ENSFCAG00000002167 ortholog_one2many 1 retrogene
retro_fcat_624,
Homo sapiens ENSG00000132541 ortholog_one2many 3 retrogenes
retro_hsap_1502, retro_hsap_284, retro_hsap_3022,
Gorilla gorilla ENSGGOG00000001185 ortholog_one2many 1 retrogene
retro_ggor_1153,
Loxodonta africana ENSLAFG00000002078 possible_ortholog 1 retrogene
retro_lafr_437,
Microcebus murinus ENSMICG00000004356 ortholog_one2many 13 retrogenes
retro_mmur_1096, retro_mmur_1206, retro_mmur_1323, retro_mmur_209, retro_mmur_222, retro_mmur_364, retro_mmur_533, retro_mmur_589, retro_mmur_597, retro_mmur_603, retro_mmur_79, retro_mmur_870, retro_mmur_97,
Macaca mulatta ENSMMUG00000011825 ortholog_many2many 2 retrogenes
retro_mmul_558, retro_mmul_88,
Monodelphis domestica ENSMODG00000006575 ortholog_one2many 1 retrogene
retro_mdom_319,
Mustela putorius furo ENSMPUG00000015253 ortholog_one2many 1 retrogene
retro_mputfur_1449,
Mus musculus ENSMUSG00000022323 possible_ortholog 1 retrogene
retro_mmus_3584,
Nomascus leucogenys ENSNLEG00000002485 ortholog_one2many 3 retrogenes
retro_nleu_1721, retro_nleu_3065, retro_nleu_837,
Ornithorhynchus anatinus ENSOANG00000021532 ortholog_one2many 1 retrogene
retro_oana_33,
Otolemur garnettii ENSOGAG00000001465 ortholog_many2many 3 retrogenes
retro_ogar_2308, retro_ogar_2951, retro_ogar_552,
Pongo abelii ENSPPYG00000018776 ortholog_one2many 3 retrogenes
retro_pabe_1253, retro_pabe_2504, retro_pabe_387,
Pan troglodytes ENSPTRG00000020457 ortholog_one2many 3 retrogenes
retro_ptro_1019, retro_ptro_2040, retro_ptro_234,
Sus scrofa ENSSSCG00000006079 ortholog_one2many 1 retrogene
retro_sscr_834,
Ictidomys tridecemlineatus ENSSTOG00000011452 possible_ortholog 4 retrogenes
retro_itri_1591, retro_itri_192, retro_itri_605, retro_itri_894,
Tupaia belangeri ENSTBEG00000002602 possible_ortholog 10 retrogenes
retro_tbel_1543, retro_tbel_1602, retro_tbel_2450, retro_tbel_2868, retro_tbel_2995, retro_tbel_3589, retro_tbel_421, retro_tbel_621, retro_tbel_888, retro_tbel_953,
Tarsius syrichta ENSTSYG00000003085 possible_ortholog 6 retrogenes
retro_tsyr_120, retro_tsyr_1541, retro_tsyr_226, retro_tsyr_373, retro_tsyr_624, retro_tsyr_798,
Tursiops truncatus ENSTTRG00000016066 ortholog_one2many 5 retrogenes
retro_ttru_1282, retro_ttru_1589, retro_ttru_1626, retro_ttru_369, retro_ttru_909,
Vicugna pacos ENSVPAG00000008277 ortholog_one2many 3 retrogenes
retro_vpac_30, retro_vpac_358, retro_vpac_89,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_465 52.21 78.83
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2. retro_cjac_1702 67.82 62.04
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Download FASTA sequences of all ENSCJAG00000015560 retrocopies