RetrogeneDB ID: | retro_cpor_1304 | ||
Retrocopylocation | Organism: | Guinea Pig (Cavia porcellus) | |
Coordinates: | scaffold_68:79125..79588(+) | ||
Located in intron of: | ENSCPOG00000012107 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL23A | ||
Ensembl ID: | ENSCPOG00000001452 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 51.9 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 1 |
Parental | MAPKAKKEAPAPPKAEAKAKALKAKKAVLKGIHSHKKKKIRTSPTFRRPKTLRLRRQPKYP-RKSAPRRN |
M.PK.KKEAPA.PKAEAKAK.LK......K......K.KI..SP.....K.LR..RQP.YP.R...P... | |
Retrocopy | MVPKTKKEAPAVPKAEAKAKVLKTRR*HWK-VFTTTKRKI*RSPVLLLCKSLRSARQPRYP>RRTHPKEI |
Parental | KLDHYAIIKFPLTTESAMKKIEDNNTLVFIVDVKA-NKHQIKQAVKKLYDIDVAKVNTLIRPDGEKKAYV |
.L...........TESAMKK.ED..TL.F..DVKA.NK...KQA.KKLY.IDVA....L..PDGEKKAY. | |
Retrocopy | RL--VPVLSSSSDTESAMKKREDETTLAFFMDVKATNKPRTKQALKKLYNIDVANIHALTSPDGEKKAYI |
Parental | RLAPDYDALDVANKIGII |
..AP..DA.D.A...G.I | |
Retrocopy | *PAPEHDARDSASRTGFI |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .12 RPM | 156 .96 RPM |
SRP017611_kidney | 0 .94 RPM | 251 .77 RPM |
SRP017611_liver | 0 .91 RPM | 164 .53 RPM |
SRP040447_lung | 1 .87 RPM | 302 .47 RPM |
SRP040447_skeletal_muscle | 0 .29 RPM | 269 .76 RPM |