Parental gene:

RPL23A, ENSDNOG00000019487

Aliases:None
Description:ribosomal protein L23a [Source:HGNC Symbol;Acc:10317]
Organism:Armadillo (Dasypus novemcinctus)
Coordinates:GeneScaffold_5429:105433..107971(+)


>ENSDNOG00000019487
CTTTCTCTGGGAACCCCGTGTCTTCAGACCTGTAAGAAATCAGTGCCCTCAACTTTACTCATTTTCCTTCTTTTCCAATG
GAACTGTACAGTCCCCAGAATGACTGTGCTGCGAACGCCTGCCCCTCCCAAAACAGAAGCCAAAGCAAAAGCTTTGAAAG
CCAAGAAGGCAGTACTGAAAGGCGTCCACAGCCACAAAAAAAAGAAGATCCGCACGTCACCCACCTTCCGGCGGCCTAAG
ACGCTGCGTCTCAGGAGACAGCCCAAATATCCTCGGAAAAGCGCCCCCAGGAGAAACAAGCTTGACCACTATGCCATCAT
CAAGTTCCCCCTGACCACTGAGTCAGCCATGAAGAAGATTGAAGACAACAACACACTTGTGTTCATTGTGGATGTCAAGG
CCAACAAGCACCAGATCAAGCAAGCTGTGAAGAAGCTCTATGACATTGATGTGGCCAAGGTCAACACCCTGATCAGGCCT
GATGGAGAGAAGAAGGCATATGTTCGACTGGCTCCTGACTATGATGCTTTGGATGTTGCCAACAAAATTGGGATCATCTA
A

Library Parental gene expression (RPM)
SRP012922_ascending_colon 146 .05 RPM
SRP012922_cerebellum 82 .62 RPM
SRP012922_heart 77 .96 RPM
SRP012922_kidney 124 .03 RPM
SRP012922_liver 87 .00 RPM
SRP012922_lung 200 .07 RPM
SRP012922_quadricep_muscle 140 .03 RPM
SRP012922_spleen 210 .72 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000004684 possible_ortholog 31 retrogenes
retro_amel_1044, retro_amel_1154, retro_amel_121, retro_amel_1254, retro_amel_1302, retro_amel_1383, retro_amel_1391, retro_amel_1423, retro_amel_1503, retro_amel_1505, retro_amel_1511, retro_amel_1527, retro_amel_1532, retro_amel_1568, retro_amel_1576, retro_amel_1585, retro_amel_1702, retro_amel_1822, retro_amel_288, retro_amel_304, retro_amel_323, retro_amel_467, retro_amel_479, retro_amel_514, retro_amel_667, retro_amel_75, retro_amel_773, retro_amel_843, retro_amel_894, retro_amel_901, retro_amel_956,
Bos taurus ENSBTAG00000046394 possible_ortholog 6 retrogenes
retro_btau_132, retro_btau_159, retro_btau_169, retro_btau_178, retro_btau_237, retro_btau_8,
Callithrix jacchus ENSCJAG00000013126 possible_ortholog 7 retrogenes
retro_cjac_118, retro_cjac_154, retro_cjac_20, retro_cjac_258, retro_cjac_30, retro_cjac_315, retro_cjac_46,
Cavia porcellus ENSCPOG00000001452 possible_ortholog 6 retrogenes
retro_cpor_1275, retro_cpor_1304, retro_cpor_1311, retro_cpor_153, retro_cpor_445, retro_cpor_966,
Equus caballus ENSECAG00000008928 possible_ortholog 1 retrogene
retro_ecab_42,
Felis catus ENSFCAG00000004021 possible_ortholog 35 retrogenes
retro_fcat_1003, retro_fcat_1011, retro_fcat_1030, retro_fcat_1039, retro_fcat_1054, retro_fcat_1071, retro_fcat_1073, retro_fcat_11, retro_fcat_1124, retro_fcat_1161, retro_fcat_1202, retro_fcat_1205, retro_fcat_1275, retro_fcat_1389, retro_fcat_1659, retro_fcat_1670, retro_fcat_1748, retro_fcat_1787, retro_fcat_1796, retro_fcat_1810, retro_fcat_182, retro_fcat_185, retro_fcat_1856, retro_fcat_1905, retro_fcat_1909, retro_fcat_1944, retro_fcat_2022, retro_fcat_289, retro_fcat_364, retro_fcat_476, retro_fcat_603, retro_fcat_657, retro_fcat_765, retro_fcat_898, retro_fcat_950,
Gorilla gorilla ENSGGOG00000016736 ortholog_one2one 26 retrogenes
retro_ggor_1027, retro_ggor_1028, retro_ggor_1123, retro_ggor_120, retro_ggor_123, retro_ggor_1284, retro_ggor_140, retro_ggor_1431, retro_ggor_158, retro_ggor_1650, retro_ggor_1743, retro_ggor_1789, retro_ggor_1911, retro_ggor_1948, retro_ggor_2164, retro_ggor_2239, retro_ggor_2285, retro_ggor_229, retro_ggor_2409, retro_ggor_2475, retro_ggor_2568, retro_ggor_2764, retro_ggor_2773, retro_ggor_580, retro_ggor_611, retro_ggor_642,
Loxodonta africana ENSLAFG00000013387 possible_ortholog 16 retrogenes
retro_lafr_1176, retro_lafr_153, retro_lafr_237, retro_lafr_33, retro_lafr_335, retro_lafr_442, retro_lafr_510, retro_lafr_525, retro_lafr_551, retro_lafr_557, retro_lafr_643, retro_lafr_78, retro_lafr_891, retro_lafr_908, retro_lafr_957, retro_lafr_96,
Myotis lucifugus ENSMLUG00000012448 possible_ortholog 4 retrogenes
retro_mluc_175, retro_mluc_2375, retro_mluc_353, retro_mluc_91,
Monodelphis domestica ENSMODG00000019297 possible_ortholog 3 retrogenes
retro_mdom_120, retro_mdom_870, retro_mdom_912,
Mustela putorius furo ENSMPUG00000014179 possible_ortholog 12 retrogenes
retro_mputfur_102, retro_mputfur_106, retro_mputfur_123, retro_mputfur_159, retro_mputfur_168, retro_mputfur_179, retro_mputfur_3, retro_mputfur_333, retro_mputfur_42, retro_mputfur_52, retro_mputfur_599, retro_mputfur_91,
Mus musculus ENSMUSG00000058546 possible_ortholog 8 retrogenes
retro_mmus_1, retro_mmus_126, retro_mmus_130, retro_mmus_184, retro_mmus_224, retro_mmus_64, retro_mmus_84, retro_mmus_95,
Nomascus leucogenys ENSNLEG00000002872 ortholog_one2one 60 retrogenes
retro_nleu_1004, retro_nleu_1216, retro_nleu_1273, retro_nleu_1290, retro_nleu_1398, retro_nleu_1448, retro_nleu_145, retro_nleu_1544, retro_nleu_158, retro_nleu_160, retro_nleu_161, retro_nleu_1775, retro_nleu_1782, retro_nleu_2004, retro_nleu_2010, retro_nleu_203, retro_nleu_211, retro_nleu_2115, retro_nleu_213, retro_nleu_2312, retro_nleu_2339, retro_nleu_2406, retro_nleu_2413, retro_nleu_2455, retro_nleu_2468, retro_nleu_2474, retro_nleu_2492, retro_nleu_2514, retro_nleu_2594, retro_nleu_2661, retro_nleu_2664, retro_nleu_2784, retro_nleu_2788, retro_nleu_2925, retro_nleu_2943, retro_nleu_2960, retro_nleu_2964, retro_nleu_3026, retro_nleu_3031, retro_nleu_3037, retro_nleu_3056, retro_nleu_3096, retro_nleu_3101, retro_nleu_3107, retro_nleu_3108, retro_nleu_3110, retro_nleu_3114, retro_nleu_3118, retro_nleu_3123, retro_nleu_3124, retro_nleu_328, retro_nleu_355, retro_nleu_356, retro_nleu_401, retro_nleu_473, retro_nleu_518, retro_nleu_641, retro_nleu_902, retro_nleu_938, retro_nleu_966,
Procavia capensis ENSPCAG00000017002 ortholog_one2one 30 retrogenes
retro_pcap_103, retro_pcap_122, retro_pcap_131, retro_pcap_187, retro_pcap_213, retro_pcap_215, retro_pcap_221, retro_pcap_233, retro_pcap_246, retro_pcap_279, retro_pcap_320, retro_pcap_321, retro_pcap_331, retro_pcap_336, retro_pcap_342, retro_pcap_347, retro_pcap_368, retro_pcap_372, retro_pcap_382, retro_pcap_390, retro_pcap_392, retro_pcap_396, retro_pcap_437, retro_pcap_450, retro_pcap_453, retro_pcap_460, retro_pcap_61, retro_pcap_70, retro_pcap_82, retro_pcap_96,
Pongo abelii ENSPPYG00000008108 possible_ortholog 49 retrogenes
retro_pabe_1030, retro_pabe_1203, retro_pabe_1206, retro_pabe_1335, retro_pabe_1430, retro_pabe_1459, retro_pabe_1590, retro_pabe_1721, retro_pabe_1747, retro_pabe_1752, retro_pabe_1766, retro_pabe_1797, retro_pabe_1846, retro_pabe_1848, retro_pabe_1867, retro_pabe_1926, retro_pabe_1947, retro_pabe_1995, retro_pabe_2018, retro_pabe_2057, retro_pabe_2075, retro_pabe_2082, retro_pabe_2091, retro_pabe_2132, retro_pabe_2156, retro_pabe_2221, retro_pabe_2334, retro_pabe_234, retro_pabe_243, retro_pabe_2612, retro_pabe_2738, retro_pabe_2773, retro_pabe_2820, retro_pabe_2944, retro_pabe_3006, retro_pabe_3036, retro_pabe_3200, retro_pabe_3371, retro_pabe_3477, retro_pabe_351, retro_pabe_3528, retro_pabe_354, retro_pabe_474, retro_pabe_627, retro_pabe_754, retro_pabe_765, retro_pabe_799, retro_pabe_946, retro_pabe_984,
Pteropus vampyrus ENSPVAG00000002922 ortholog_one2one 32 retrogenes
retro_pvam_1002, retro_pvam_1004, retro_pvam_1083, retro_pvam_1113, retro_pvam_113, retro_pvam_1211, retro_pvam_1226, retro_pvam_1268, retro_pvam_1300, retro_pvam_1329, retro_pvam_1350, retro_pvam_1363, retro_pvam_1456, retro_pvam_159, retro_pvam_249, retro_pvam_385, retro_pvam_425, retro_pvam_436, retro_pvam_445, retro_pvam_511, retro_pvam_526, retro_pvam_537, retro_pvam_564, retro_pvam_593, retro_pvam_72, retro_pvam_729, retro_pvam_752, retro_pvam_840, retro_pvam_897, retro_pvam_927, retro_pvam_947, retro_pvam_95,
Rattus norvegicus ENSRNOG00000023344 possible_ortholog 6 retrogenes
retro_rnor_136, retro_rnor_145, retro_rnor_211, retro_rnor_40, retro_rnor_404, retro_rnor_62,
Sarcophilus harrisii ENSSHAG00000014549 possible_ortholog 13 retrogenes
retro_shar_188, retro_shar_373, retro_shar_407, retro_shar_448, retro_shar_498, retro_shar_564, retro_shar_624, retro_shar_630, retro_shar_685, retro_shar_698, retro_shar_824, retro_shar_829, retro_shar_835,
Sus scrofa ENSSSCG00000017768 possible_ortholog 9 retrogenes
retro_sscr_1025, retro_sscr_1047, retro_sscr_1133, retro_sscr_239, retro_sscr_356, retro_sscr_418, retro_sscr_598, retro_sscr_638, retro_sscr_952,
Sus scrofa ENSSSCG00000029802 possible_ortholog 4 retrogenes
retro_sscr_115, retro_sscr_170, retro_sscr_248, retro_sscr_430,
Ictidomys tridecemlineatus ENSSTOG00000011328 possible_ortholog 23 retrogenes
retro_itri_1022, retro_itri_1035, retro_itri_1051, retro_itri_1059, retro_itri_1071, retro_itri_1150, retro_itri_1261, retro_itri_1327, retro_itri_1347, retro_itri_1460, retro_itri_1507, retro_itri_217, retro_itri_225, retro_itri_304, retro_itri_360, retro_itri_494, retro_itri_626, retro_itri_627, retro_itri_734, retro_itri_761, retro_itri_791, retro_itri_965, retro_itri_972,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_dnov_64 78.38 79.03
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2. retro_dnov_67 73.28 60.75
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3. retro_dnov_120 85.91 79.03
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4. retro_dnov_123 77.18 79.03
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5. retro_dnov_127 62.67 80.11
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6. retro_dnov_171 74.60 66.67
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7. retro_dnov_183 80.00 78.49
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8. retro_dnov_203 71.55 61.29
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9. retro_dnov_246 61.33 79.57
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10. retro_dnov_267 86.79 56.45
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11. retro_dnov_372 96.60 79.03
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12. retro_dnov_401 58.99 73.66
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13. retro_dnov_429 85.03 79.03
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14. retro_dnov_470 70.25 63.98
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15. retro_dnov_499 72.14 73.66
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16. retro_dnov_556 87.25 79.03
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17. retro_dnov_581 91.22 79.03
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18. retro_dnov_591 72.79 78.49
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19. retro_dnov_611 71.11 72.04
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20. retro_dnov_625 74.00 79.03
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21. retro_dnov_636 71.96 55.91
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22. retro_dnov_683 69.80 79.57
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23. retro_dnov_704 89.00 53.23
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24. retro_dnov_718 75.17 76.34
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25. retro_dnov_731 59.85 70.43
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26. retro_dnov_736 75.86 61.83
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27. retro_dnov_749 70.27 79.57
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28. retro_dnov_769 75.50 78.49
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29. retro_dnov_813 75.68 79.03
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30. retro_dnov_832 76.71 77.96
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31. retro_dnov_903 84.43 65.59
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32. retro_dnov_929 91.84 79.03
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33. retro_dnov_972 70.27 79.03
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34. retro_dnov_1018 77.55 77.96
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35. retro_dnov_1065 89.05 73.66
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36. retro_dnov_1069 83.78 79.03
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37. retro_dnov_1082 86.07 65.59
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38. retro_dnov_1169 71.81 79.03
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39. retro_dnov_1238 86.58 78.49
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40. retro_dnov_1283 75.33 79.03
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41. retro_dnov_1365 72.79 72.04
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42. retro_dnov_1460 70.27 79.03
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43. retro_dnov_1514 79.55 70.43
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44. retro_dnov_1538 80.67 79.03
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45. retro_dnov_1541 83.19 63.44
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46. retro_dnov_1597 81.51 63.98
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47. retro_dnov_1781 78.15 80.11
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48. retro_dnov_1793 91.16 79.03
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49. retro_dnov_1816 92.52 79.03
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50. retro_dnov_1835 73.60 67.20
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51. retro_dnov_1837 78.81 79.03
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52. retro_dnov_1873 77.27 58.60
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53. retro_dnov_1926 71.71 79.03
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54. retro_dnov_2046 93.15 78.49
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55. retro_dnov_2051 78.08 77.96
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56. retro_dnov_2089 90.41 77.42
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57. retro_dnov_2178 93.88 79.03
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58. retro_dnov_2256 71.01 72.04
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59. retro_dnov_2278 68.71 78.49
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60. retro_dnov_2284 79.19 79.03
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61. retro_dnov_2343 65.49 75.27
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62. retro_dnov_2368 61.49 79.03
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63. retro_dnov_2493 69.42 63.44
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64. retro_dnov_2563 76.16 79.03
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65. retro_dnov_2573 71.52 79.03
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Download FASTA sequences of all ENSDNOG00000019487 retrocopies