RetrogeneDB ID: | retro_cpor_445 | ||
Retrocopylocation | Organism: | Guinea Pig (Cavia porcellus) | |
Coordinates: | scaffold_16:4394513..4394807(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL23A | ||
Ensembl ID: | ENSCPOG00000001452 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 52.48 % |
Parental protein coverage: | 62.82 % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 2 |
Parental | KYPRKSAPRRNKLDHYAIIKFPLTTESAMKKIEDNNTLV-FIVDVKANKHQIK-QAVKKLYDIDVAKVNT |
K.P.KS.PRRNKLDH..II...L.T.SAM...EDNN....F..DVKA....I.....KK.YDI..A.VN. | |
Retrocopy | K*P*KSSPRRNKLDHHVIIILSLITKSAM-RTEDNNKVI<FTLDVKARLMFIR*EPKKKPYDINMAQVNS |
Parental | LIRPDG-EKKAYVRLAPDYDALDVANKIGII |
LI.P...E....V.LAPD.DA....NKI.II | |
Retrocopy | LIMPNT>E*CIHVPLAPDFDAFNITNKIRII |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 156 .96 RPM |
SRP017611_kidney | 0 .00 RPM | 251 .77 RPM |
SRP017611_liver | 0 .00 RPM | 164 .53 RPM |
SRP040447_lung | 0 .03 RPM | 302 .47 RPM |
SRP040447_skeletal_muscle | 0 .00 RPM | 269 .76 RPM |