Parental gene:

ENSSHAG00000014549

Aliases:None
Description:None
Organism:Tasmanian devil (Sarcophilus harrisii)
Coordinates:GL857001.1:1515558..1519103(+)


>ENSSHAG00000014549
ATGGCGCCGAAGGCGAAGAAGGAAGCCGCCGTCCCTCCCAAGACAGAAGCCAAGTCCAAAGCCTTGAAGGCCAAGAAGGC
CGTGTTGAAGGGTGTCCACAGCCACAAGAAGAAGAAGATCCGAACGTCCCCCACCTTCCGGCGACCCAAGACACTAAGAC
TTCGGAGGCAGCCCAAATACCCTCGGAAAAGTGCCCCTCGGAGAAACAAGCTTGATCACTATGCCATCATTAAGTTTCCC
TTGACTACTGAGTCTGCCATGAAGAAGATTGAGGACAACAACACCCTGGTATTCATTGTGGACGTCAAGGCCAACAAGCA
TCAGATCAAGCAGGCAGTGAAGAAACTGTACGACATCGACGTGGCCAAGGTCAACACGCTGATCAGGCCTGATGGAGAGA
AGAAGGCCTATGTCCGCCTTGCTCCAGACTATGATGCGCTAGATGTTGCCAACAAAATTGGAATCATCTAA

Species Parental gene accession Homology type Retrogenes number
Anolis carolinensis ENSACAG00000005311 ortholog_one2many 2 retrogenes
Ailuropoda melanoleuca ENSAMEG00000004684 possible_ortholog 31 retrogenes
Bos taurus ENSBTAG00000046394 possible_ortholog 6 retrogenes
Callithrix jacchus ENSCJAG00000013126 possible_ortholog 7 retrogenes
Cavia porcellus ENSCPOG00000001452 possible_ortholog 6 retrogenes
Dasypus novemcinctus ENSDNOG00000019487 possible_ortholog 65 retrogenes
Dipodomys ordii ENSDORG00000000974 possible_ortholog 10 retrogenes
Equus caballus ENSECAG00000008928 possible_ortholog 1 retrogene
Felis catus ENSFCAG00000004021 possible_ortholog 35 retrogenes
Homo sapiens ENSG00000198242 possible_ortholog 57 retrogenes
Gorilla gorilla ENSGGOG00000016736 possible_ortholog 26 retrogenes
Loxodonta africana ENSLAFG00000013387 possible_ortholog 16 retrogenes
Myotis lucifugus ENSMLUG00000012448 possible_ortholog 4 retrogenes
Monodelphis domestica ENSMODG00000019297 possible_ortholog 3 retrogenes
Mustela putorius furo ENSMPUG00000014179 possible_ortholog 12 retrogenes
Mus musculus ENSMUSG00000058546 possible_ortholog 8 retrogenes
Nomascus leucogenys ENSNLEG00000002872 possible_ortholog 60 retrogenes
Ochotona princeps ENSOPRG00000012620 possible_ortholog 49 retrogenes
Procavia capensis ENSPCAG00000017002 possible_ortholog 30 retrogenes
Pongo abelii ENSPPYG00000008108 possible_ortholog 49 retrogenes
Pteropus vampyrus ENSPVAG00000002922 possible_ortholog 32 retrogenes
Rattus norvegicus ENSRNOG00000023344 possible_ortholog 6 retrogenes
Sus scrofa ENSSSCG00000017768 possible_ortholog 9 retrogenes
Sus scrofa ENSSSCG00000029802 possible_ortholog 4 retrogenes
Ictidomys tridecemlineatus ENSSTOG00000011328 possible_ortholog 23 retrogenes

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_shar_188 53.45 74.36
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2. retro_shar_373 59.15 89.74
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3. retro_shar_407 63.46 98.72
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4. retro_shar_448 69.44 89.74
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5. retro_shar_498 61.49 100.00
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6. retro_shar_564 64.83 89.74
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7. retro_shar_624 67.86 69.23
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8. retro_shar_630 71.20 79.49
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9. retro_shar_685 74.05 100.00
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10. retro_shar_698 61.64 92.95
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11. retro_shar_824 76.23 76.92
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12. retro_shar_829 52.94 65.38
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13. retro_shar_835 57.76 74.36
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Download FASTA sequences of all ENSSHAG00000014549 retrocopies