Parental gene:

RPL23A, ENSGGOG00000016736

Aliases:None
Description:None
Organism:Gorilla (Gorilla gorilla)
Coordinates:5:55627667..55632135(-)


>ENSGGOG00000016736
CATCCACTGGTTGGAGCTCCATGTCCCCGGGCCTGTAAGGAATTGGTGCCCTCAGCTTTAACCATTTTCCTTGTGGTTCA
TGTTCAACCGGGCTACATTACCCGCCCCTCTCTCTGCAGCGTGGTTTTGCGATGGGCTCCTGCCCCTCCTAAAGCTGAAG
CCAAAGCGAAGGCTTTAAAGGCCAAGAAGGCAGTGTTGAAAGGTGTCCACAGCCACAAAAAGAAGAAGATCCGCACGTCA
CCCACCTTCCGGCGGCCGAAGACACTGCGACTCCGGAGACAGCCCAAATATCCTCGGAAGAGCGCTCCCAGGAGAAACAA
GCTTGACCACTATGCTATCATCAAGTTTCCGCTGACCACTGAGTCTGCCATGAAGAAGATAGAAGACAACAACACACTTG
TGTTCATTGTGGATGTTAAAGCCAACAAGCACCAGATTAAACAGGCTGTGAAGAAGCTGTATGACATTGATGTGGCCAAG
GTCAACACCCTGATTCGGCCTGATGGAGAGAAGAAGGCATATGTTCGACTGGCTCCTGATTACGATGCTTTGGATGTTGC
CAACAAAATTGGGATCATCTAA

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 93 .61 RPM
SRP007412_cerebellum 115 .63 RPM
SRP007412_heart 64 .54 RPM
SRP007412_kidney 296 .57 RPM
SRP007412_liver 287 .41 RPM
SRP007412_testis 182 .65 RPM



Species Parental gene accession Homology type Retrogenes number
Anolis carolinensis ENSACAG00000005311 possible_ortholog 2 retrogenes
Ailuropoda melanoleuca ENSAMEG00000004684 possible_ortholog 31 retrogenes
Bos taurus ENSBTAG00000046394 possible_ortholog 6 retrogenes
Callithrix jacchus ENSCJAG00000013126 possible_ortholog 7 retrogenes
Cavia porcellus ENSCPOG00000001452 possible_ortholog 6 retrogenes
Dasypus novemcinctus ENSDNOG00000019487 ortholog_one2one 65 retrogenes
Dipodomys ordii ENSDORG00000000974 possible_ortholog 10 retrogenes
Equus caballus ENSECAG00000008928 possible_ortholog 1 retrogene
Felis catus ENSFCAG00000004021 possible_ortholog 35 retrogenes
Homo sapiens ENSG00000198242 possible_ortholog 57 retrogenes
Loxodonta africana ENSLAFG00000013387 possible_ortholog 16 retrogenes
Myotis lucifugus ENSMLUG00000012448 possible_ortholog 4 retrogenes
Monodelphis domestica ENSMODG00000019297 possible_ortholog 3 retrogenes
Mustela putorius furo ENSMPUG00000014179 possible_ortholog 12 retrogenes
Mus musculus ENSMUSG00000058546 possible_ortholog 8 retrogenes
Nomascus leucogenys ENSNLEG00000002872 ortholog_one2one 60 retrogenes
Ochotona princeps ENSOPRG00000012620 possible_ortholog 49 retrogenes
Procavia capensis ENSPCAG00000017002 ortholog_one2one 30 retrogenes
Pongo abelii ENSPPYG00000008108 possible_ortholog 49 retrogenes
Pteropus vampyrus ENSPVAG00000002922 ortholog_one2one 32 retrogenes
Rattus norvegicus ENSRNOG00000023344 possible_ortholog 6 retrogenes
Sarcophilus harrisii ENSSHAG00000014549 possible_ortholog 13 retrogenes
Sus scrofa ENSSSCG00000017768 possible_ortholog 9 retrogenes
Sus scrofa ENSSSCG00000029802 possible_ortholog 4 retrogenes
Ictidomys tridecemlineatus ENSSTOG00000011328 possible_ortholog 23 retrogenes

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ggor_120 93.59 100.00
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2. retro_ggor_123 91.50 98.08
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3. retro_ggor_140 90.45 100.00
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4. retro_ggor_158 83.33 100.00
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5. retro_ggor_229 96.19 67.31
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6. retro_ggor_580 87.97 100.00
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7. retro_ggor_611 89.81 98.72
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8. retro_ggor_642 89.10 100.00
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9. retro_ggor_1027 82.28 100.00
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10. retro_ggor_1028 80.77 98.08
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11. retro_ggor_1123 82.28 100.00
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12. retro_ggor_1284 80.12 100.00
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13. retro_ggor_1431 94.23 100.00
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14. retro_ggor_1650 64.71 51.30
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15. retro_ggor_1743 82.00 94.87
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16. retro_ggor_1789 66.21 91.03
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17. retro_ggor_1911 85.99 100.00
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18. retro_ggor_1948 84.81 100.00
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19. retro_ggor_2164 86.39 75.65
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20. retro_ggor_2239 86.62 100.00
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21. retro_ggor_2285 76.73 100.00
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22. retro_ggor_2409 82.28 100.00
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23. retro_ggor_2475 83.54 100.00
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24. retro_ggor_2568 84.40 55.96
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25. retro_ggor_2764 58.60 98.72
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26. retro_ggor_2773 92.36 100.00
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Download FASTA sequences of all ENSGGOG00000016736 retrocopies