Parental gene:

ENSOCUG00000013805

Aliases:None
Description:None
Organism:Rabbit (Oryctolagus cuniculus)
Coordinates:15:67927991..67932821(+)


>ENSOCUG00000013805
ATGGAGGTCCCGCCCCGGCTCTCCCATGCGCCGCCGCCATTGTTCCCCTCCGCGCCCGCTACTTTAGCCTCCCGCAGCCT
CTCCCATCAGCTCGCCCCGCTGCTCCCGTCGCTCGCTGCCAGCTCCGCCCGGCAGGGGGCGCGCCGGAGCCAGCGCCACG
TCACCGCGCAGCAGCCCTCCCGATTGGCGGGCGGGGCGGCTATAAAGGGAGGGCGCAGGCGGCGCCCGGATCTCTTCCGC
CGCCATTTTAAATCCAGCTCCATACAACGCTCCGCCGCCGCGACCCGCACCGCGCGCCAGCACCCCCCTGCCGACCGCTC
CGCCGCCATGGAGGATATGAACGAGTACAGCAACATAGAGGAGTTCGCGGAGGGATCCAAGATCAACGCGAGCAAGGCTT
GGCGTTACACAAATAAAATGTTTATTGGAGGCTTGAGCTGGGATACGAGCAAAAAAGATCTGACTGAATATTTGTCTCGA
TTTGGAGAAGTTGTAGACTGTACAATTAAAACAGATCCGGTCACGGGAAGATCAAGAGGATTTGGATTTGTGCTTTTCAA
AGATGCTGCTAGTGTTGATAAGGTTTTGGAACTGAAAGAACACAAACTGGATGGCAAATTGATAGACCCGAAAAGGGCCA
AAGCTTTAAAAGGGAAAGAACCCCCTAAAAAGGTTTTTGTGGGTGGATTGAGTCCAGATACTTCTGAAGAGCAAATTAAA
GAATATTTTGGAGCCTTTGGAGAGATTGAAAACATTGAACTTCCCATGGATACAAAAACAAATGAAAGAAGAGGGTTTTG
CTTTATCACATACACAGATGAAGAGCCAGTAAAGAAATTGTTGGAAAGCAGATACCATCAAATTGGTTCTGGGAAGTGTG
AAATCAAAGTTGCACAACCTAAAGAAGTATATAGGCAGCAACAGCAACAACAGAAAGGAGGACGAGGTGCTGCAGCTGGT
GGCCGAGGTGGTACTAGGGGTCGTGGCCGAGGTCAGGGCCAAAACTGGAACCAAGGATTTAATAACTATTATGATCAAGG
ATATGGAAATTACAATAGTGCCTATGGTGGTGATCAAAACTATAGTGGCTATGGCGGATATGATTATACTGGGTATAACT
ATGGGAACTATGGATATGGACAGGGATATGCAGACTACAGTGGTCAACAGAGCACTTATGGCAAGGCATCTCGAGGGGGT
GGCAATCACCAAAATAATTACCAGCCATACTAA

Library Parental gene expression (RPM)
SRP017611_brain 156 .29 RPM
SRP017611_kidney 73 .79 RPM
SRP017611_liver 46 .32 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000014804 ortholog_one2one 2 retrogenes
retro_btau_1827, retro_btau_461,
Choloepus hoffmanni ENSCHOG00000000160 possible_ortholog 8 retrogenes
retro_chof_115, retro_chof_1470, retro_chof_2108, retro_chof_2370, retro_chof_533, retro_chof_59, retro_chof_741, retro_chof_890,
Choloepus hoffmanni ENSCHOG00000003275 possible_ortholog 2 retrogenes
retro_chof_1578, retro_chof_18,
Cavia porcellus ENSCPOG00000015619 ortholog_one2one 5 retrogenes
retro_cpor_1110, retro_cpor_1318, retro_cpor_264, retro_cpor_274, retro_cpor_567,
Equus caballus ENSECAG00000022692 ortholog_one2one 1 retrogene
retro_ecab_1082,
Microcebus murinus ENSMICG00000001445 ortholog_one2one 4 retrogenes
retro_mmur_1016, retro_mmur_1570, retro_mmur_1572, retro_mmur_557,
Myotis lucifugus ENSMLUG00000014452 ortholog_one2one 2 retrogenes
retro_mluc_1140, retro_mluc_1761,
Mustela putorius furo ENSMPUG00000014753 ortholog_one2one 2 retrogenes
retro_mputfur_1359, retro_mputfur_600,
Oryctolagus cuniculus ENSOCUG00000002743 other_paralog 2 retrogenes
retro_ocun_994, retro_ocun_995,
Oryctolagus cuniculus ENSOCUG00000013350 other_paralog 1 retrogene
retro_ocun_1675,
Oryctolagus cuniculus ENSOCUG00000026424 within_species_paralog 3 retrogenes
retro_ocun_1800, retro_ocun_1811, retro_ocun_950,
Oryctolagus cuniculus ENSOCUG00000026859 within_species_paralog 2 retrogenes
retro_ocun_1205, retro_ocun_642,
Otolemur garnettii ENSOGAG00000002501 possible_ortholog 4 retrogenes
retro_ogar_2717, retro_ogar_2791, retro_ogar_437, retro_ogar_693,
Ochotona princeps ENSOPRG00000007178 ortholog_one2one 3 retrogenes
retro_opri_1075, retro_opri_623, retro_opri_703,
Procavia capensis ENSPCAG00000011543 ortholog_one2one 1 retrogene
retro_pcap_366,
Rattus norvegicus ENSRNOG00000002270 ortholog_one2one 1 retrogene
retro_rnor_1365,
Sorex araneus ENSSARG00000009961 ortholog_one2one 1 retrogene
retro_sara_421,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ocun_505 90.21 81.46
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Download FASTA sequences of all ENSOCUG00000013805 retrocopies