RetrogeneDB ID: | retro_cpor_654 | ||
Retrocopylocation | Organism: | Guinea Pig (Cavia porcellus) | |
Coordinates: | scaffold_21:13318760..13319588(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSCPOG00000023015 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | YB1 | ||
Ensembl ID: | ENSCPOG00000010888 | ||
Aliases: | None | ||
Description: | Y box binding protein 1 [Source:RefSeq peptide;Acc:NP_001166512] |
Percent Identity: | 78.87 % |
Parental protein coverage: | 85.8 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 6 |
Parental | TKPGTTGSGAGSGGPGGLTSAAPAGGDKKVIATKVLGTVKWFNVRNGYGFINRNDTKE-DVFVHQTAIKK |
T.P..........G.GGL.SA.PAGGDKKVI.TKVLGTVKWF.VR.G.GFINRNDTKE.DVFV.QTAIKK | |
Retrocopy | TAPALSAADTKPCGQGGLRSAPPAGGDKKVITTKVLGTVKWFSVRYGCGFINRNDTKE<DVFVYQTAIKK |
Parental | NNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGPGGVPVQGSK-YAADRNHYRRYPRRRGPPRNYQQNY |
.NPRK.L.SVGDG.TVE.DVVEGEKGAEAANVTGP.GVPVQ.S..YAADRNHYR..PR..GPPRNYQQNY | |
Retrocopy | KNPRKCLPSVGDGDTVESDVVEGEKGAEAANVTGPAGVPVQDST<YAADRNHYRCSPRGTGPPRNYQQNY |
Parental | QNSESGEKNEGSESAPEGQAQQ-RRPY-RRRRFPPYYMRRPYGRRPQYSNPPVQGE-VMEGADNQGAGEQ |
Q..ESG.KNEGS...P.GQ.QQ..RPY.RR.RFP.YYMRRPYGR.PQYSNPPVQGE.VM.GADNQGAGEQ | |
Retrocopy | QIVESGAKNEGSKNTPKGQSQQ<MRPY<RRQRFPSYYMRRPYGRAPQYSNPPVQGE<VMVGADNQGAGEQ |
Parental | GRQVRQNMYRGYRPRFRRGPPRQRQPREDGNEEDKENQGDETQGQQPPQRRYR-RNFNYRRRRPENPKPQ |
GRQVRQNMYRGY.PRFRRGPP.QRQPREDGNEEDKENQGDETQGQQPPQR..R..NFNYR.R.PEN.KPQ | |
Retrocopy | GRQVRQNMYRGYTPRFRRGPPCQRQPREDGNEEDKENQGDETQGQQPPQRGHR<LNFNYRGRCPENAKPQ |
Parental | DGKE |
DG.. | |
Retrocopy | DGRD |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 81 .67 RPM |
SRP017611_kidney | 0 .10 RPM | 293 .44 RPM |
SRP017611_liver | 0 .00 RPM | 148 .64 RPM |
SRP040447_lung | 0 .03 RPM | 353 .45 RPM |
SRP040447_skeletal_muscle | 0 .00 RPM | 809 .64 RPM |