Parental gene:

YBX1, ENSPPYG00000001466

Aliases:None
Description:Y box binding protein 1 [Source:HGNC Symbol;Acc:8014]
Organism:Orangutan (Pongo abelii)
Coordinates:1:187355106..187377301(-)


>ENSPPYG00000001466
ATGAGCAGCGAGGCCGAGACCCAGCAGCCGCCCGCCGCCCCCCCCGCCGCCCCCGCCCTCAGCGCCGCCGACACCAAGCC
CGGCACTACGGGCAGCGGCGCAGGGAGCGGTGGCCCGGGCGGCCTCACATCGGCGGCGCCTGCCGGCGGGGACAAGAAGG
TCATCGCAACGAAGGTTTTGGGAACAGTAAAATGGTTCAATGTAAGGAACGGATATGGTTTCATCAACACTGCCATAAAG
AAGAATAACCCCAGGAAGTACCTTCGCAGTGTAGGAGATGGAGAGACTGTGGAGTTTGATGTTGTTGAAGGAGAAAAGGG
TGCGGAGGCAGCAAATGTTACAGGTCCTGGTGGTGTTCCAGTTCAAGGCAGTAAATATGCAGCAGACCGTAACCATTATA
GACGCTATCCACGTCGTAGGGGTCCTCCACGCAATTACCAGCAAAATTACCAGAATAGTGAGAGTGGGGAAAAGAACGAG
GGATCGGAGAGTGCTCCCGAAGGCCAGGCCCAACAACGCCGGCCCTACCGCAGGCGAAGGTTCCCACCTTACTACATGCG
GAGACCCTATGGGCGTCGACCACAGTATTCCAACCCTCCTGTGCAGGGAGAAGTGATGGAGGGTGCTGACAACCAGGGTG
CAGGAGAACAAGGTAGACCAGTGAGGCAGAATATGTATCGGGGATATAGACCACGATTCCGCAGGGGCCCTCCTCGCCAA
AGACAGCCTAGAGAGGACGGCAATGAAGAAGATAAAGAAAATCAAGGAGATGAGACCCAAGGTCAGCAGCCACCTCAACG
TCGGTACCGCCGCAACTTCAATTACCGACGCAGACGCCCAGAAAACCCTAAACCACAAGATGGCAAAGAGACAAAAGCAG
CCGATCCACCAGCTGAGAATTCGTCCGCTCCCGAGGCTGAGCAGGGCGGGGCTGAGTAA

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 45 .01 RPM
SRP007412_cerebellum 29 .91 RPM
SRP007412_heart 215 .15 RPM
SRP007412_kidney 165 .70 RPM
SRP007412_liver 124 .18 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000000494 ortholog_one2one 9 retrogenes
retro_amel_1280, retro_amel_1358, retro_amel_141, retro_amel_1486, retro_amel_215, retro_amel_418, retro_amel_625, retro_amel_837, retro_amel_909,
Canis familiaris ENSCAFG00000002541 ortholog_one2one 4 retrogenes
retro_cfam_1312, retro_cfam_2118, retro_cfam_758, retro_cfam_91,
Callithrix jacchus ENSCJAG00000003155 ortholog_one2one 6 retrogenes
retro_cjac_1261, retro_cjac_1701, retro_cjac_2718, retro_cjac_3156, retro_cjac_4172, retro_cjac_817,
Cavia porcellus ENSCPOG00000010888 ortholog_one2one 3 retrogenes
retro_cpor_654, retro_cpor_833, retro_cpor_905,
Felis catus ENSFCAG00000022604 ortholog_one2one 6 retrogenes
retro_fcat_145, retro_fcat_1554, retro_fcat_1956, retro_fcat_241, retro_fcat_503, retro_fcat_631,
Homo sapiens ENSG00000065978 ortholog_one2one 4 retrogenes
retro_hsap_1433, retro_hsap_3886, retro_hsap_4250, retro_hsap_4301,
Loxodonta africana ENSLAFG00000007597 possible_ortholog 1 retrogene
retro_lafr_804,
Microcebus murinus ENSMICG00000014984 ortholog_one2one 19 retrogenes
retro_mmur_1098, retro_mmur_1285, retro_mmur_1326, retro_mmur_1435, retro_mmur_1437, retro_mmur_1445, retro_mmur_1621, retro_mmur_199, retro_mmur_315, retro_mmur_413, retro_mmur_581, retro_mmur_640, retro_mmur_676, retro_mmur_679, retro_mmur_726, retro_mmur_837, retro_mmur_900, retro_mmur_919, retro_mmur_942,
Macaca mulatta ENSMMUG00000013136 ortholog_one2one 5 retrogenes
retro_mmul_1139, retro_mmul_1423, retro_mmul_2017, retro_mmul_423, retro_mmul_861,
Nomascus leucogenys ENSNLEG00000012324 ortholog_one2one 7 retrogenes
retro_nleu_1053, retro_nleu_1188, retro_nleu_1312, retro_nleu_1601, retro_nleu_1749, retro_nleu_1888, retro_nleu_270,
Oryctolagus cuniculus ENSOCUG00000028047 possible_ortholog 2 retrogenes
retro_ocun_1519, retro_ocun_1953,
Otolemur garnettii ENSOGAG00000006784 possible_ortholog 25 retrogenes
retro_ogar_1127, retro_ogar_1246, retro_ogar_1350, retro_ogar_1371, retro_ogar_1497, retro_ogar_2011, retro_ogar_2018, retro_ogar_2302, retro_ogar_2359, retro_ogar_2607, retro_ogar_2654, retro_ogar_3170, retro_ogar_3225, retro_ogar_324, retro_ogar_3303, retro_ogar_3316, retro_ogar_3317, retro_ogar_3366, retro_ogar_3416, retro_ogar_3474, retro_ogar_448, retro_ogar_572, retro_ogar_678, retro_ogar_690, retro_ogar_753,
Pongo abelii ENSPPYG00000004279 within_species_paralog 1 retrogene
retro_pabe_1420,
Pteropus vampyrus ENSPVAG00000005504 ortholog_one2one 7 retrogenes
retro_pvam_1255, retro_pvam_1348, retro_pvam_1391, retro_pvam_145, retro_pvam_405, retro_pvam_76, retro_pvam_971,
Sorex araneus ENSSARG00000007896 ortholog_one2one 1 retrogene
retro_sara_559,
Tarsius syrichta ENSTSYG00000006915 ortholog_one2one 6 retrogenes
retro_tsyr_1030, retro_tsyr_173, retro_tsyr_2037, retro_tsyr_610, retro_tsyr_840, retro_tsyr_996,
Tursiops truncatus ENSTTRG00000001353 ortholog_one2one 2 retrogenes
retro_ttru_461, retro_ttru_746,
Vicugna pacos ENSVPAG00000000068 ortholog_one2one 2 retrogenes
retro_vpac_235, retro_vpac_647,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_pabe_1216 91.56 75.96
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2. retro_pabe_1320 92.41 75.64
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3. retro_pabe_2054 86.52 56.41
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4. retro_pabe_2292 69.28 52.88
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5. retro_pabe_3167 89.45 75.64
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6. retro_pabe_3388 92.83 75.64
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7. retro_pabe_3502 71.71 82.69
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Download FASTA sequences of all ENSPPYG00000001466 retrocopies