RetrogeneDB ID: | retro_tsyr_996 | ||
Retrocopylocation | Organism: | Tarsier (Tarsius syrichta) | |
Coordinates: | scaffold_2700:51591..52084(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | YBX1 | ||
Ensembl ID: | ENSTSYG00000006915 | ||
Aliases: | None | ||
Description: | Y box binding protein 1 [Source:HGNC Symbol;Acc:8014] |
Percent Identity: | 60.71 % |
Parental protein coverage: | 50.62 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 3 |
Parental | SAADTMSGTPGSLPGSGDLVALISPAFARAGKNVIATKVLGTVKWFNVRNGYGFINXXXXXXXXXXXXTA |
SAA.....T.GS..GSG....L.S.A.A.....VIA.KVLGTVKWF..RNGY.FIN............TA | |
Retrocopy | SAANAKPCTTGSGAGSGGPGGLTSTAPAGGDEKVIARKVLGTVKWFRARNGYEFINRNDTKEVVFVHQTA |
Parental | IKKNN-PR-KYLRSVGDGETVEFDVVEGEKGAEAANVTG-PGGVPVQGSKYAADRNHYRRYPRRRGPPR- |
.KKN..P...YLRSVG.GE.VE.DV..GE.GAEAANVTG.P.GV.VQGS.YAADRNHYRRYPRRRGPP.. | |
Retrocopy | TKKNK*PQ>EYLRSVGEGEAVESDVD*GEEGAEAANVTG<PSGVLVQGSEYAADRNHYRRYPRRRGPPQ> |
Parental | NYQQNYQNSESGEKNEGSESAPEGQAQQ |
..Q........G.KNE.SESAPEGQAQQ | |
Retrocopy | SQQNHQNSESVG-KNEESESAPEGQAQQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |