Parental gene:

YBX1, ENSMICG00000014984

Aliases:None
Description:Y box binding protein 1 [Source:HGNC Symbol;Acc:8014]
Organism:Mouse Lemur (Microcebus murinus)
Coordinates:GeneScaffold_3792:262796..280533(+)


>ENSMICG00000014984
ATGAGCAGCGAGCCCGAGACCCAGCAGCCGCCCGCCGCCCCCCCCGCCGCCAGAGCCGTCAGCTCTGCAAACACCCCCGT
CACCTCGGGTGGGTATGAAGGAAGCCGTTGCCCGGCTTACCCTGGAGCGGCAGGATCGGAGGGAGAAGGACAGAAGGGCA
GCGCAACGAAGGTTTTGGGGACAGTAAAATGGTTCAATGTAAGAAACGGATATGGTTTCATCAACAGGAATGACACCAAG
GAAGATGTATTTGTACACCAGACTGCCATAAAGAAGAATAACCCCAGGAAGTACCTTCGCAGTGTAGGAGATGGAGAGAC
TGTGGAGTTTGATGTTGTTGAAGGAGAAAAGGGTGCGGAGGCAGCAAATGTTACAGGCCCTGGTGGAATTCCAGTTCAAG
GCAGTAAATATGCAGCAGACCGTAACCATTATAGACGCTATCCACGTCGCAGGGGTCCTCCACGCAATTACCAGCAAAAT
TACCAGAACAGTGAGAGTGGGGAAAAGAATGAGGGATCGGAGAGTGCTCCTGAAGGCCAGGCCCAACAACGCCGGCCCTA
CCGCAGGCGAAGGTTCCCACCTTACTACATGCGGAGACCCTATGGGCGTCGACCACAGTATTCCAACCCTCCTGTACAGG
GAGAAGTGATGGAGGGTGCTGACAACCAGGGTGCAGGAGAACAAGGTAGACCACCAGTAAGACAGAATATGTATCGGGGT
TATAGACCACGATTCCGCAGGGGCCCTCCTCGCCAAAGACAGCCCAGAGAGGACGGCAATGAAGAGGATAAAGAGAATCA
AGGAGATGAGACCCAAGGTCAGCAGCCGCCTCAACGTCGGTACCGCCGCAACTTCAATTACCGACGCAGACGCCCAGAAA
ACCCTAAACCACAAGATGGCAAAGAGACAAAAGCAGCCGATCCACCAGCTGAGAATTCGTCCGCTCCCGAGGCTGAGCAG
GGCGGGGCTGAGTAA

Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000000494 ortholog_one2one 9 retrogenes
retro_amel_1280, retro_amel_1358, retro_amel_141, retro_amel_1486, retro_amel_215, retro_amel_418, retro_amel_625, retro_amel_837, retro_amel_909,
Canis familiaris ENSCAFG00000002541 ortholog_one2one 4 retrogenes
retro_cfam_1312, retro_cfam_2118, retro_cfam_758, retro_cfam_91,
Callithrix jacchus ENSCJAG00000003155 ortholog_one2one 6 retrogenes
retro_cjac_1261, retro_cjac_1701, retro_cjac_2718, retro_cjac_3156, retro_cjac_4172, retro_cjac_817,
Cavia porcellus ENSCPOG00000010888 ortholog_one2one 3 retrogenes
retro_cpor_654, retro_cpor_833, retro_cpor_905,
Felis catus ENSFCAG00000022604 ortholog_one2one 6 retrogenes
retro_fcat_145, retro_fcat_1554, retro_fcat_1956, retro_fcat_241, retro_fcat_503, retro_fcat_631,
Homo sapiens ENSG00000065978 ortholog_one2one 4 retrogenes
retro_hsap_1433, retro_hsap_3886, retro_hsap_4250, retro_hsap_4301,
Loxodonta africana ENSLAFG00000007597 possible_ortholog 1 retrogene
retro_lafr_804,
Microcebus murinus ENSMICG00000004602 within_species_paralog 1 retrogene
retro_mmur_337,
Macaca mulatta ENSMMUG00000013136 ortholog_one2one 5 retrogenes
retro_mmul_1139, retro_mmul_1423, retro_mmul_2017, retro_mmul_423, retro_mmul_861,
Nomascus leucogenys ENSNLEG00000012324 ortholog_one2one 7 retrogenes
retro_nleu_1053, retro_nleu_1188, retro_nleu_1312, retro_nleu_1601, retro_nleu_1749, retro_nleu_1888, retro_nleu_270,
Oryctolagus cuniculus ENSOCUG00000028047 possible_ortholog 2 retrogenes
retro_ocun_1519, retro_ocun_1953,
Otolemur garnettii ENSOGAG00000006784 possible_ortholog 25 retrogenes
retro_ogar_1127, retro_ogar_1246, retro_ogar_1350, retro_ogar_1371, retro_ogar_1497, retro_ogar_2011, retro_ogar_2018, retro_ogar_2302, retro_ogar_2359, retro_ogar_2607, retro_ogar_2654, retro_ogar_3170, retro_ogar_3225, retro_ogar_324, retro_ogar_3303, retro_ogar_3316, retro_ogar_3317, retro_ogar_3366, retro_ogar_3416, retro_ogar_3474, retro_ogar_448, retro_ogar_572, retro_ogar_678, retro_ogar_690, retro_ogar_753,
Pongo abelii ENSPPYG00000001466 ortholog_one2one 7 retrogenes
retro_pabe_1216, retro_pabe_1320, retro_pabe_2054, retro_pabe_2292, retro_pabe_3167, retro_pabe_3388, retro_pabe_3502,
Pteropus vampyrus ENSPVAG00000005504 ortholog_one2one 7 retrogenes
retro_pvam_1255, retro_pvam_1348, retro_pvam_1391, retro_pvam_145, retro_pvam_405, retro_pvam_76, retro_pvam_971,
Sorex araneus ENSSARG00000007896 ortholog_one2one 1 retrogene
retro_sara_559,
Tarsius syrichta ENSTSYG00000006915 ortholog_one2one 6 retrogenes
retro_tsyr_1030, retro_tsyr_173, retro_tsyr_2037, retro_tsyr_610, retro_tsyr_840, retro_tsyr_996,
Tursiops truncatus ENSTTRG00000001353 ortholog_one2one 2 retrogenes
retro_ttru_461, retro_ttru_746,
Vicugna pacos ENSVPAG00000000068 ortholog_one2one 2 retrogenes
retro_vpac_235, retro_vpac_647,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_mmur_199 94.83 89.20
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2. retro_mmur_315 82.95 53.40
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3. retro_mmur_413 63.27 75.00
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4. retro_mmur_581 89.55 82.10
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5. retro_mmur_640 76.35 99.07
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6. retro_mmur_676 78.24 64.51
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7. retro_mmur_679 60.81 67.59
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8. retro_mmur_726 74.68 71.91
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9. retro_mmur_837 82.07 76.23
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10. retro_mmur_900 74.03 55.25
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11. retro_mmur_919 79.21 54.63
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12. retro_mmur_942 96.14 63.27
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13. retro_mmur_1098 91.61 87.35
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14. retro_mmur_1285 53.92 65.74
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15. retro_mmur_1326 76.56 78.40
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16. retro_mmur_1435 85.22 96.30
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17. retro_mmur_1437 63.44 84.57
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18. retro_mmur_1445 85.28 70.68
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19. retro_mmur_1621 97.09 84.88
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Download FASTA sequences of all ENSMICG00000014984 retrocopies