RetrogeneDB ID: | retro_dord_785 | ||
Retrocopylocation | Organism: | Kangaroo rat (Dipodomys ordii) | |
Coordinates: | scaffold_97594:4688..4901(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Ube2e1 | ||
Ensembl ID: | ENSDORG00000015441 | ||
Aliases: | None | ||
Description: | ubiquitin-conjugating enzyme E2E 1 [Source:MGI Symbol;Acc:MGI:107411] |
Percent Identity: | 52. % |
Parental protein coverage: | 68.18 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 0 |
Parental | QKELADITLDPPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFTPEYPFKPPKVTFRTRIYHC |
.KELA...L.P..NC.A.PKGD.I.E..S....PPGS..E..V.F....F...Y..KPPKVTF.TRIYHC | |
Retrocopy | EKELAQMSLAPHANCIADPKGDDICE*-SSYIDPPGSE*E--VMFC-LFFPSDYLLKPPKVTFHTRIYHC |
Parental | NINSQ |
N.... | |
Retrocopy | NSSQE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ciona intestinalis | ENSCING00000006860 | 1 retrocopy | |
Cavia porcellus | ENSCPOG00000002251 | 2 retrocopies | |
Dipodomys ordii | ENSDORG00000006762 | 2 retrocopies | |
Dipodomys ordii | ENSDORG00000006888 | 5 retrocopies | |
Dipodomys ordii | ENSDORG00000011406 | 1 retrocopy | |
Dipodomys ordii | ENSDORG00000015441 | 1 retrocopy |
retro_dord_785 ,
|
Macropus eugenii | ENSMEUG00000014517 | 1 retrocopy | |
Mus musculus | ENSMUSG00000021774 | 3 retrocopies | |
Pteropus vampyrus | ENSPVAG00000001773 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000008794 | 3 retrocopies | |
Sarcophilus harrisii | ENSSHAG00000001416 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000025799 | 2 retrocopies |