RetrogeneDB ID: | retro_mmus_2600 | ||
Retrocopylocation | Organism: | Mouse (Mus musculus) | |
Coordinates: | 5:117058811..117059392(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Ube2e1 | ||
Ensembl ID: | ENSMUSG00000021774 | ||
Aliases: | Ube2e1, UbcM3, Ubce5, ubcM2 | ||
Description: | ubiquitin-conjugating enzyme E2E 1 [Source:MGI Symbol;Acc:MGI:107411] |
Percent Identity: | 84.34 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 3 |
Parental | MSDDDSRASTSSSSSSSSNQQTEKEGSTPKKKESKVSMSKNSKLLSTSAKRIQK-ELADITLDPPPNCSA |
.SD.DSRASTSSS.S.SSNQQTEKEGSTPKKKESKVSMSKNSKLLSTS.KRIQK.ELADITLDPPPNCSA | |
Retrocopy | ISDEDSRASTSSSPSLSSNQQTEKEGSTPKKKESKVSMSKNSKLLSTSTKRIQK<ELADITLDPPPNCSA |
Parental | GPKGDN--IYEWRSTILGPPGSVYEGGVFFLDITFTPEYPFKPPK-VTFRTRIYHCNINSQGVICLDILK |
GPKGDN..IYEWRSTILGPPGSV.E.G.FF....F.P.......K.VT.RTR.YHCNINSQGVICLDIL. | |
Retrocopy | GPKGDNIYIYEWRSTILGPPGSVCESG-FFP*RYFYPRVSLQASK>VTSRTRMYHCNINSQGVICLDILR |
Parental | DNWSPALT-ISKVLLSICSLLTDCNPADPLVGSIATQYMTNRAEHDRMARQWTKRYAT |
DNWSPALT.ISKVLLSICSLL.DCNPADPLVGS.ATQYMTNRAEHDRMARQWT.RYAT | |
Retrocopy | DNWSPALT<ISKVLLSICSLLIDCNPADPLVGSVATQYMTNRAEHDRMARQWTQRYAT |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 25 .37 RPM |
SRP007412_cerebellum | 0 .00 RPM | 30 .70 RPM |
SRP007412_heart | 0 .03 RPM | 12 .20 RPM |
SRP007412_kidney | 0 .02 RPM | 26 .53 RPM |
SRP007412_liver | 0 .03 RPM | 16 .60 RPM |
SRP007412_testis | 0 .00 RPM | 11 .75 RPM |