RetrogeneDB ID: | retro_rnor_1632 | ||
Retrocopylocation | Organism: | Rat (Rattus norvegicus) | |
Coordinates: | 2:124706366..124706718(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Ube2e1 | ||
Ensembl ID: | ENSRNOG00000008794 | ||
Aliases: | None | ||
Description: | ubiquitin-conjugating enzyme E2E 1 [Source:MGI Symbol;Acc:MGI:107411] |
Percent Identity: | 74.8 % |
Parental protein coverage: | 77.56 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | MSKNSKLLSTSAKRIQKELADITLDPPPNCSAGPKGDNIYEWRST-ILGPPGSVYEGGVFFLDITFTPE- |
MSK.SKLLST.AK.....LADI.LDP.PNCS..P.GD.IYE.R....LGPP.SVYE.GVFFLDIT.TP.. | |
Retrocopy | MSKSSKLLSTRAKG---KLADIPLDPLPNCSSAPEGDSIYE*REM<VLGPPESVYERGVFFLDITITPR< |
Parental | YPFKPPKVTFRTRIYHCNINSQGVICLDILKDNWSPALTISKVLLSICSLLTD |
.PFKPPK.TF.TRIYH.NINS.GVICLDILKDNW.PALTISK.LLSICSLLT. | |
Retrocopy | HPFKPPKDTFHTRIYHGNINSPGVICLDILKDNWRPALTISKALLSICSLLTN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 49 .54 RPM |
SRP017611_kidney | 0 .00 RPM | 37 .05 RPM |
SRP017611_liver | 0 .00 RPM | 15 .73 RPM |