RetrogeneDB ID: | retro_rnor_2343 | ||
Retrocopylocation | Organism: | Rat (Rattus norvegicus) | |
Coordinates: | 6:27915323..27915759(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Ube2e1 | ||
Ensembl ID: | ENSRNOG00000008794 | ||
Aliases: | None | ||
Description: | ubiquitin-conjugating enzyme E2E 1 [Source:MGI Symbol;Acc:MGI:107411] |
Percent Identity: | 68.21 % |
Parental protein coverage: | 96.15 % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 1 |
Parental | SKLLSTSAKRIQKELADITLDPPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFTPEYPFKPP |
SKLL.T.AK...KELADITL.PP.N.S..PKG..I.E.RSTILG.P.SVYEGGVF.L.I.FT..Y.F..P | |
Retrocopy | SKLLYTIAK---KELADITLEPPLNSSTSPKG-HISE*RSTILGLPRSVYEGGVFYLNISFTLRYSF*SP |
Parental | KVTFR-TRIYHCNINSQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPLVGSIATQYMTNRAEH |
KVTF..TRIYHC.INSQ.VICL.ILKDNWS..L.IS.V....CSLL..CNPAD..VG.IAT..MTN.AEH | |
Retrocopy | KVTFF>TRIYHCTINSQ*VICLYILKDNWSLSLPISNVFF-FCSLLIECNPADSFVGIIATHCMTNIAEH |
Parental | DRMARQWTKRY |
.RM.RQ.TKRY | |
Retrocopy | GRMPRQ*TKRY |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 49 .54 RPM |
SRP017611_kidney | 0 .00 RPM | 37 .05 RPM |
SRP017611_liver | 0 .00 RPM | 15 .73 RPM |