RetrogeneDB ID: | retro_rnor_2291 | ||
Retrocopylocation | Organism: | Rat (Rattus norvegicus) | |
Coordinates: | 6:55458820..55459266(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Ube2e1 | ||
Ensembl ID: | ENSRNOG00000008794 | ||
Aliases: | None | ||
Description: | ubiquitin-conjugating enzyme E2E 1 [Source:MGI Symbol;Acc:MGI:107411] |
Percent Identity: | 77.48 % |
Parental protein coverage: | 96.15 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | LLSTSAKRIQKELADITLDPPPNCSAGPKGDNIYEWRSTILGPPGSVYE-GGVFFLDITFTPEYPFKPPK |
LLSTSA..IQKELADITLD..PNCSA.PKGDNIYEWR.TILGP.GS.YE..G.FFL..TF.PEYP.K.P. | |
Retrocopy | LLSTSAEMIQKELADITLDSLPNCSAAPKGDNIYEWRATILGPLGSTYE<SGIFFLNLTFIPEYPIKHPQ |
Parental | VTFRTRIYHCNINSQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPLVGSIATQYMTNRAEHDR |
VTF.TR.YHC.INSQ.VICL.ILKD..S.A.TISKV.LSICSL.TDC.PA.PLVGS.ATQYMTNRAEH.R | |
Retrocopy | VTFHTRMYHCKINSQRVICLHILKDG-SLAVTISKVFLSICSLHTDCSPAHPLVGSLATQYMTNRAEHNR |
Parental | MARQWTKRYAT |
MARQ.TKR.AT | |
Retrocopy | MARQ*TKR*AT |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 49 .54 RPM |
SRP017611_kidney | 0 .00 RPM | 37 .05 RPM |
SRP017611_liver | 0 .00 RPM | 15 .73 RPM |