RetrogeneDB ID: | retro_ecab_678 | ||
Retrocopylocation | Organism: | Horse (Equus caballus) | |
Coordinates: | 27:3332056..3332603(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL17 | ||
Ensembl ID: | ENSECAG00000011547 | ||
Aliases: | None | ||
Description: | ribosomal protein L17 [Source:HGNC Symbol;Acc:10307] |
Percent Identity: | 60.64 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 6 |
Number of frameshifts detected | 3 |
Parental | KMVRYSLDPENPTKSCKSRGSNLRVHFKNTRETAQAIKGMHIRKATKYLKDVTLKKQCVPFRRYNGGVG- |
KM...SL..E.P.KSCKSRGSNLRVHFK.T.ETAQA...M.I.KA...L.D.TL.K..VP...YNG.... | |
Retrocopy | KMGHCSLNLETPIKSCKSRGSNLRVHFKDTCETAQAM*DMRI*KAY*SLRDATLQKPRVPLGGYNGATV< |
Parental | RCAQAKQWGWTQGRWPKKSAEFLLHMLKNAESNAELKGLDVDSLVIEHIQVNKAPKMRRRTYRAHG-RIN |
RCAQ..QWGWTQG..PKKSAEFLLH.L..A.SNA.L..LDV.SLV.E..Q..KA..M...T.RA.G.RI. | |
Retrocopy | RCAQTQQWGWTQGQGPKKSAEFLLHILRHADSNADLQDLDVSSLVKELTQASKASRMHL*TCRALG>RI* |
Parental | PY-MSSPCHIEMILTEKEQIVPKPEEEVAQKKKISQKKLKKQKLMARE |
P...SS...IE....E.E.IVPKPE.EVAQ.KKISQK....QKLMA.E | |
Retrocopy | PL>VSSSSRIEITFPETE*IVPKPEDEVAQQKKISQK---QQKLMAWE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP021940_articular_cartilage | 0 .00 RPM | 837 .99 RPM |
SRP021940_cerebellum | 0 .00 RPM | 238 .68 RPM |
SRP021940_embryo | 0 .10 RPM | 569 .09 RPM |
SRP021940_placental_villous | 0 .00 RPM | 338 .75 RPM |
SRP021940_synovial_membrane | 0 .03 RPM | 487 .80 RPM |
SRP021940_testis | 0 .00 RPM | 215 .62 RPM |
Species | RetrogeneDB ID |
---|---|
Pan troglodytes | retro_ptro_2680 |
Pongo abelii | retro_pabe_3253 |