Parental gene:

MMU.17950, ENSMMUG00000018837

Aliases:None
Description:60S ribosomal protein L17 [Source:RefSeq peptide;Acc:NP_001180491]
Organism:Rhesus macaque (Macaca mulatta)
Coordinates:18:42518962..42531439(-)


>ENSMMUG00000018837
ATGGTTCGCTATTCACTTGACCCGGAGAACCCCACGAAATCATGCAAATCAAGAGGTTCCAATCTTCGTGTTCACTTTAA
GAACACTCGTGAAACTGCCCAGGCCATCAAGGGTATGCATATTCGAAAAGCCACGAAGTATCTGAAAGATGTCACTTTAC
AGAAACAGTGCGTACCATTCCGACGTTACAATGGTGGAGTTGGCAGGTGTGCCCAGGCCAAGCAGTGGGGCTGGACACAG
GGTCGGTGGCCCAAGAAGAGTGCTGAATTTTTGCTGCACATGCTTAAAAATGCAGAGAGTAATGCTGAACTTAAGGGTTT
AGATGTAGATTCTCTGGTCATCGAGCATATCCAAGTGAACAAAGCACCTAAGATGCGCCGACGAACCTACAGAGCTCATG
GTCGCATTAACCCATACATGAGCTCTCCCTGCCACATTGAGATGATCCTTACTGAAAAGGAACAGATTGTTCCTAAACCA
GAAGAGGAAGTTGCCCAGAAGAAAAAGTTGAAGAGCTCAAGCTCGGGAAAATGGTGTGCATTCCTTGTATCGTCATTCCA
GTTCTGCTCTGGATCTACAAAAAATTCCTGGAGCCATACATATACCCTCTGA

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 147 .16 RPM
SRP007412_brain 105 .22 RPM
SRP007412_cerebellum 110 .75 RPM
SRP007412_heart 135 .38 RPM
SRP007412_kidney 159 .50 RPM
SRP007412_liver 114 .12 RPM
SRP007412_testis 101 .55 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000009498 possible_ortholog 40 retrogenes
Bos taurus ENSBTAG00000022902 possible_ortholog 5 retrogenes
Canis familiaris ENSCAFG00000019044 possible_ortholog 7 retrogenes
Callithrix jacchus ENSCJAG00000004779 possible_ortholog 4 retrogenes
Cavia porcellus ENSCPOG00000019337 possible_ortholog 31 retrogenes
Equus caballus ENSECAG00000011547 possible_ortholog 9 retrogenes
Felis catus ENSFCAG00000011342 possible_ortholog 43 retrogenes
Homo sapiens ENSG00000215472 ortholog_one2one 1 retrogene
Homo sapiens ENSG00000265681 possible_ortholog 33 retrogenes
Gorilla gorilla ENSGGOG00000026697 possible_ortholog 1 retrogene
Latimeria chalumnae ENSLACG00000008835 possible_ortholog 1 retrogene
Loxodonta africana ENSLAFG00000005569 possible_ortholog 16 retrogenes
Myotis lucifugus ENSMLUG00000025554 possible_ortholog 22 retrogenes
Myotis lucifugus ENSMLUG00000029264 possible_ortholog 36 retrogenes
Monodelphis domestica ENSMODG00000003534 possible_ortholog 11 retrogenes
Mustela putorius furo ENSMPUG00000000801 possible_ortholog 7 retrogenes
Mus musculus ENSMUSG00000062328 possible_ortholog 80 retrogenes
Oryctolagus cuniculus ENSOCUG00000012485 possible_ortholog 2 retrogenes
Pan troglodytes ENSPTRG00000010012 possible_ortholog 51 retrogenes
Rattus norvegicus ENSRNOG00000018680 possible_ortholog 48 retrogenes
Sarcophilus harrisii ENSSHAG00000003060 possible_ortholog 14 retrogenes
Sus scrofa ENSSSCG00000029642 possible_ortholog 30 retrogenes
Ictidomys tridecemlineatus ENSSTOG00000005193 possible_ortholog 33 retrogenes
Vicugna pacos ENSVPAG00000009568 possible_ortholog 1 retrogene

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_mmul_46 97.94 52.72
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2. retro_mmul_163 97.83 100.00
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3. retro_mmul_172 96.74 100.00
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4. retro_mmul_474 94.08 82.07
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5. retro_mmul_589 67.24 63.04
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6. retro_mmul_652 92.82 98.37
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7. retro_mmul_669 82.17 70.11
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8. retro_mmul_825 100.00 100.00
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9. retro_mmul_956 64.49 57.07
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10. retro_mmul_971 65.17 95.11
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11. retro_mmul_1015 78.91 69.02
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12. retro_mmul_1046 97.28 100.00
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13. retro_mmul_1205 66.13 66.30
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14. retro_mmul_1216 99.46 100.00
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15. retro_mmul_1225 65.54 94.02
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16. retro_mmul_1441 85.82 72.83
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17. retro_mmul_1784 67.94 67.93
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18. retro_mmul_1858 61.96 99.46
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19. retro_mmul_1952 87.10 100.00
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20. retro_mmul_2006 66.21 69.95
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21. retro_mmul_2008 85.41 100.00
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22. retro_mmul_2257 72.08 82.61
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23. retro_mmul_2268 79.14 80.30
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24. retro_mmul_2284 88.11 100.00
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25. retro_mmul_2304 57.58 71.20
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26. retro_mmul_2512 96.76 100.00
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Download FASTA sequences of all ENSMMUG00000018837 retrocopies