Parental gene:

ENSCPOG00000019337

Aliases:None
Description:None
Organism:Guinea Pig (Cavia porcellus)
Coordinates:scaffold_14:16066790..16069771(+)


>ENSCPOG00000019337
CCTGTGAAAATGGTTCGCTACTCTCTTGACCCAGAAAACCCCACAAAATCATGCAAATCCAGAGGCTCAAATCTTCGGGT
TCACTTTAAGAACACCCGTGAAACTGCCCAGGCCATCAAGGGTATGCATATCCGCAAGGCCACCAAGTATCTGAAGGATG
TCACGTTAAAGAAGCAATGTGTGCCATTCCGGCGTTACAATGGTGGAGTTGGAAGATGTGCCCAGGCCAAACAATGGGGC
TGGACCCAGGGTCGGTGGCCCAAAAAGAGTGCTGAATTTTTGCTGCACATGCTTAAAAATGCAGAGAGTAATGCTGAACT
TAAGGGTTTAGATGTAGATTCTCTGGTCATTGAACATATCCAGGTGAACAAAGCACCCAAGATGCGCCGCCGTACTTACA
GAGCTCATGGCCGTATTAACCCATACATGAGCTCTCCCTGCCACATTGAGATGATCCTTACTGAAAAGGAACAGATTGTG
CCTAAACCAGAGGAGGAAGTTGCACAGAAGAAAAAAATATCTCAGAAGAAACTGAAGAAACAAAAACTTATGGCACGGGA
ATAA

Library Parental gene expression (RPM)
SRP017611_liver 112 .95 RPM
SRP017611_kidney 156 .51 RPM
SRP017611_brain 100 .83 RPM
SRP040447_lung 221 .34 RPM
SRP040447_skeletal_muscle 227 .83 RPM



Species Parental gene accession Homology type Retrogenes number
Choloepus hoffmanni ENSCHOG00000007872 possible_ortholog 50 retrogenes
Equus caballus ENSECAG00000011547 ortholog_one2one 9 retrogenes
Echinops telfairi ENSETEG00000011322 possible_ortholog 10 retrogenes
Homo sapiens ENSG00000215472 possible_ortholog 1 retrogene
Latimeria chalumnae ENSLACG00000008835 ortholog_one2many 1 retrogene
Macropus eugenii ENSMEUG00000016709 possible_ortholog 26 retrogenes
Microcebus murinus ENSMICG00000017102 possible_ortholog 14 retrogenes
Myotis lucifugus ENSMLUG00000025554 possible_ortholog 22 retrogenes
Myotis lucifugus ENSMLUG00000029264 possible_ortholog 36 retrogenes
Macaca mulatta ENSMMUG00000018837 possible_ortholog 26 retrogenes
Mus musculus ENSMUSG00000062328 ortholog_one2one 80 retrogenes
Oryctolagus cuniculus ENSOCUG00000012485 possible_ortholog 2 retrogenes
Procavia capensis ENSPCAG00000003103 possible_ortholog 8 retrogenes
Pongo abelii ENSPPYG00000009151 possible_ortholog 43 retrogenes
Pteropus vampyrus ENSPVAG00000001969 possible_ortholog 76 retrogenes
Sarcophilus harrisii ENSSHAG00000003060 possible_ortholog 14 retrogenes
Tarsius syrichta ENSTSYG00000007402 possible_ortholog 20 retrogenes
Tursiops truncatus ENSTTRG00000005797 possible_ortholog 31 retrogenes
Vicugna pacos ENSVPAG00000009568 possible_ortholog 1 retrogene

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cpor_50 100.00 75.94
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2. retro_cpor_159 50.83 61.50
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3. retro_cpor_213 77.78 77.01
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4. retro_cpor_238 89.42 100.00
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5. retro_cpor_272 57.81 67.38
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6. retro_cpor_319 80.75 100.00
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7. retro_cpor_374 73.24 73.80
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8. retro_cpor_521 83.55 80.75
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9. retro_cpor_662 68.70 60.96
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10. retro_cpor_675 68.21 91.44
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11. retro_cpor_776 67.89 57.75
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12. retro_cpor_784 76.72 99.47
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13. retro_cpor_792 76.32 100.00
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14. retro_cpor_827 71.43 98.93
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15. retro_cpor_872 56.86 53.48
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16. retro_cpor_924 61.86 50.80
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17. retro_cpor_943 65.22 96.79
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18. retro_cpor_955 72.68 95.72
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19. retro_cpor_1004 66.19 72.19
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20. retro_cpor_1005 69.06 72.19
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21. retro_cpor_1015 61.47 57.22
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22. retro_cpor_1050 50.51 51.34
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23. retro_cpor_1083 66.36 57.75
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24. retro_cpor_1118 79.13 61.50
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25. retro_cpor_1125 82.49 93.58
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26. retro_cpor_1227 56.88 58.29
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27. retro_cpor_1271 63.19 83.42
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28. retro_cpor_1305 77.12 62.03
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29. retro_cpor_1413 61.29 65.78
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30. retro_cpor_1455 68.14 59.36
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31. retro_cpor_1539 76.42 65.24
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Download FASTA sequences of all ENSCPOG00000019337 retrocopies