RetrogeneDB ID:

retro_etel_1453

Retrocopy
location
Organism:Lesser hedgehog tenrec (Echinops telfairi)
Coordinates:scaffold_268655:6448..6746(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:RPL27
Ensembl ID:ENSETEG00000002811
Aliases:None
Description:ribosomal protein L27 [Source:HGNC Symbol;Acc:10328]


Retrocopy-Parental alignment summary:






>retro_etel_1453
GACCGGCTGGACAGCCAGGCTCTGGTGCCTGGGATCGACCGCTATCCCCACAACGTGGCAGCTCCCACAAGCAAGAAAGG
AAAAGTTGCCCAGAGATCAAAGACCACGTCTTTGATGAAGGTTTATAACTCTAATCACCTATGCCCACAAGGCACTTCGT
GGACATCCCTTCCGACAAAACTGTCATTGACAAGGAGGTTGTCAGAGACCCTGCTCTTAAACACGAGGCCGGCAGGAGGC
TGAGGTCAAATGTGAGAAGAGGTACAAAAGAGGCAAAAACAAGGTATTCTTCCAAAAA

ORF - retro_etel_1453 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 65.69 %
Parental protein coverage: 72.79 %
Number of stop codons detected: 0
Number of frameshifts detected 2


Retrocopy - Parental Gene Alignment:

ParentalDRPYSHALVAGIDRYPRKVTAAMGKK-KIAKRSKIKSFVKVYNYNHL-MPTRYSVDIPLDKTVVNKDVFR
DR..S.ALV.GIDRYP..V.A...KK.K.A.RSK..S..KVYN.NHL.MPTR..VDIP.DKTV..K.V.R
RetrocopyDRLDSQALVPGIDRYPHNVAAPTSKKGKVAQRSKTTSLMKVYNSNHL<MPTRHFVDIPSDKTVIDKEVVR
ParentalDPALKRKA-RREAKVKFEERYKTGKNKWFFQK
DPALK..A.R.EA.VK.E.RYK.GKNK.FFQK
RetrocopyDPALKHEA<RQEAEVKCEKRYKRGKNKVFFQK

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Echinops telfairi was not studied using RNA-Seq expression data.
Echinops telfairi was not studied using ChIP-Seq data.
Echinops telfairi was not studied using EST data.
Echinops telfairi was not studied using FANTOM5 data.
retro_etel_1453 was not experimentally validated.

Retrocopy orthology:
Echinops telfairi does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 18 parental genes, and 106 retrocopies.

Species Parental gene accession Retrocopies number
Ailuropoda melanoleuca ENSAMEG000000002003 retrocopies
Bos taurus ENSBTAG000000174416 retrocopies
Canis familiaris ENSCAFG000000146306 retrocopies
Callithrix jacchus ENSCJAG000000130679 retrocopies
Echinops telfairi ENSETEG00000002811 23 retrocopies
Felis catus ENSFCAG000000131426 retrocopies
Gorilla gorilla ENSGGOG000000260396 retrocopies
Loxodonta africana ENSLAFG000000142203 retrocopies
Myotis lucifugus ENSMLUG000000041191 retrocopy
Macaca mulatta ENSMMUG000000080907 retrocopies
Monodelphis domestica ENSMODG000000151281 retrocopy
Mus musculus ENSMUSG000000633162 retrocopies
Nomascus leucogenys ENSNLEG000000119012 retrocopies
Oryctolagus cuniculus ENSOCUG000000038721 retrocopy
Otolemur garnettii ENSOGAG0000000394014 retrocopies
Procavia capensis ENSPCAG000000132494 retrocopies
Rattus norvegicus ENSRNOG000000206748 retrocopies
Sarcophilus harrisii ENSSHAG000000120424 retrocopies



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