RetrogeneDB ID: | retro_etel_2139 | ||
Retrocopylocation | Organism: | Lesser hedgehog tenrec (Echinops telfairi) | |
Coordinates: | scaffold_73349:864..1212(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | CALM2 | ||
Ensembl ID: | ENSETEG00000018667 | ||
Aliases: | None | ||
Description: | calmodulin 2 (phosphorylase kinase, delta) [Source:HGNC Symbol;Acc:1445] |
Percent Identity: | 71.67 % |
Parental protein coverage: | 77.03 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 5 |
Parental | VMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGN-GYISAA |
VMR.LGQN..EA.LQDMINEVDA.GN.TIDFPEFLT.MARK.K.TDSEE..REAF.VFDK..N.G.ISA. | |
Retrocopy | VMRYLGQNLREAKLQDMINEVDAGGNDTIDFPEFLTVMARKTKNTDSEETNREAFSVFDKEDN>G*ISAE |
Parental | ELRH-VMTNLG-EKLTDEEVDEMIRE-ADIDGDGQVNY-EE-FVQMMTAK |
ELRH..MTNLG..KLTDE..DE.IRE.A.I.GDGQ....EE.FVQMM..K | |
Retrocopy | ELRH<LMTNLG>RKLTDEVFDERIRE>AAICGDGQNKFIEE>FVQMMIGK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Anolis carolinensis | ENSACAG00000015712 | 1 retrocopy | |
Choloepus hoffmanni | ENSCHOG00000008245 | 6 retrocopies | |
Cavia porcellus | ENSCPOG00000012181 | 3 retrocopies | |
Erinaceus europaeus | ENSEEUG00000000040 | 3 retrocopies | |
Echinops telfairi | ENSETEG00000009377 | 5 retrocopies | |
Echinops telfairi | ENSETEG00000018667 | 16 retrocopies | |
Ficedula albicollis | ENSFALG00000012828 | 1 retrocopy | |
Gadus morhua | ENSGMOG00000009342 | 1 retrocopy | |
Latimeria chalumnae | ENSLACG00000005059 | 1 retrocopy | |
Loxodonta africana | ENSLAFG00000009865 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000029016 | 6 retrocopies | |
Macaca mulatta | ENSMMUG00000017466 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000009222 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000008824 | 6 retrocopies | |
Petromyzon marinus | ENSPMAG00000003323 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000012430 | 5 retrocopies | |
Pelodiscus sinensis | ENSPSIG00000013173 | 1 retrocopy | |
Sus scrofa | ENSSSCG00000008433 | 1 retrocopy | |
Taeniopygia guttata | ENSTGUG00000002581 | 1 retrocopy |