RetrogeneDB ID: | retro_cpor_1012 | ||
Retrocopylocation | Organism: | Guinea Pig (Cavia porcellus) | |
Coordinates: | scaffold_4:24783971..24784395(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | CALM2 | ||
Ensembl ID: | ENSCPOG00000012181 | ||
Aliases: | None | ||
Description: | calmodulin 2 [Source:RefSeq peptide;Acc:NP_001239360] |
Percent Identity: | 71.33 % |
Parental protein coverage: | 95.95 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | LTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMA |
LTE.Q.AEFKE.FS.FDKDG.GT..TKELGTVMRSLG.NPTEAELQD.IN.VDADG..T.DFPE.LT... | |
Retrocopy | LTEIQTAEFKEDFSVFDKDGNGT-ATKELGTVMRSLGENPTEAELQDRINKVDADGTDTVDFPELLTVIE |
Parental | RK-MKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFV |
RK..KD.DSEE.IRE...VFD.DGNGYISA.EL.H.M..LGEK..DEE.D...R.AD.DGDGQ.N.EE.V | |
Retrocopy | RK>LKDADSEEAIRETSCVFDEDGNGYISAPELCHEMASLGEKVIDEEADGVSRAADTDGDGQIN*EELV |
Parental | QMM |
QMM | |
Retrocopy | QMM |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 351 .37 RPM |
SRP017611_kidney | 0 .00 RPM | 115 .68 RPM |
SRP017611_liver | 0 .00 RPM | 85 .36 RPM |
SRP040447_lung | 0 .00 RPM | 136 .14 RPM |
SRP040447_skeletal_muscle | 0 .00 RPM | 48 .26 RPM |