Parental gene:

CALM1, ENSSSCG00000008433

Aliases:None
Description:None
Organism:Pig (Sus scrofa)
Coordinates:3:99567551..99581893(-)


>ENSSSCG00000008433
ATGGCTGACCAACTGACTGAAGAGCAGATTGCAGAGTTCAAAGAAGCTTTTTCACTATTTGACAAGGATGGTGATGGAAC
TATAACAACAAAGGAATTGGGAACTGTAATGAGGTCTCTTGGGCAGAATCCCACAGAAGCAGAGTTACAGGACATGATTA
ATGAAGTAGATGCTGATGGTAACGGCACAATTGACTTCCCAGAATTTCTGACAATGATGGCAAGAAAAATGAAAGATACA
GACAGTGAAGAAGAAATTAGAGAAGCATTCCGTGTGTTTGATAAGGATGGCAATGGCTATATTAGTGCAGCAGAGCTTCG
CCATGTGATGACAAACCTTGGAGAGAAGTTAACAGATGAAGAGGTTGATGAAATGATCAGGGAAGCAGATATTGATGGTG
ATGGTCAAGTAAACTATGAAGAGTTTGTACAAATGATGACAGCAAAGTGA

Library Parental gene expression (RPM)
SRP014902_placenta 198 .30 RPM
SRP014902_testis 147 .95 RPM
SRP018288_heart 306 .20 RPM
SRP018288_kidney 345 .16 RPM
SRP018288_liver 218 .28 RPM
SRP018288_lung 187 .16 RPM
SRP018856_adipose 231 .08 RPM
SRP035408_brain 1957 .08 RPM
SRP035408_liver 346 .49 RPM



Species Parental gene accession Homology type Retrogenes number
Anolis carolinensis ENSACAG00000015712 possible_ortholog 1 retrogene
retro_acar_45,
Ailuropoda melanoleuca ENSAMEG00000006204 ortholog_one2many 2 retrogenes
retro_amel_63, retro_amel_72,
Choloepus hoffmanni ENSCHOG00000008245 ortholog_one2many 6 retrogenes
retro_chof_1940, retro_chof_2261, retro_chof_367, retro_chof_735, retro_chof_833, retro_chof_965,
Callithrix jacchus ENSCJAG00000000638 ortholog_one2many 4 retrogenes
retro_cjac_1039, retro_cjac_1401, retro_cjac_2859, retro_cjac_4097,
Cavia porcellus ENSCPOG00000012181 ortholog_many2many 3 retrogenes
retro_cpor_1012, retro_cpor_87, retro_cpor_89,
Equus caballus ENSECAG00000008396 ortholog_one2many 4 retrogenes
retro_ecab_15, retro_ecab_59, retro_ecab_750, retro_ecab_882,
Erinaceus europaeus ENSEEUG00000000040 possible_ortholog 3 retrogenes
retro_eeur_38, retro_eeur_561, retro_eeur_671,
Echinops telfairi ENSETEG00000009377 possible_ortholog 5 retrogenes
retro_etel_1062, retro_etel_1542, retro_etel_1812, retro_etel_587, retro_etel_854,
Echinops telfairi ENSETEG00000018667 possible_ortholog 16 retrogenes
retro_etel_1032, retro_etel_1075, retro_etel_108, retro_etel_1164, retro_etel_1184, retro_etel_1507, retro_etel_1650, retro_etel_1683, retro_etel_1903, retro_etel_2139, retro_etel_22, retro_etel_539, retro_etel_687, retro_etel_864, retro_etel_902, retro_etel_951,
Ficedula albicollis ENSFALG00000012828 ortholog_one2many 1 retrogene
retro_falb_16,
Felis catus ENSFCAG00000029141 ortholog_one2many 5 retrogenes
retro_fcat_1926, retro_fcat_591, retro_fcat_629, retro_fcat_87, retro_fcat_88,
Gadus morhua ENSGMOG00000009342 possible_ortholog 1 retrogene
retro_gmor_23,
Latimeria chalumnae ENSLACG00000005059 possible_ortholog 1 retrogene
retro_lcha_53,
Loxodonta africana ENSLAFG00000009865 possible_ortholog 1 retrogene
retro_lafr_655,
Myotis lucifugus ENSMLUG00000029016 ortholog_one2many 6 retrogenes
retro_mluc_13, retro_mluc_1732, retro_mluc_18, retro_mluc_19, retro_mluc_2207, retro_mluc_2258,
Macaca mulatta ENSMMUG00000017466 ortholog_many2many 1 retrogene
retro_mmul_256,
Monodelphis domestica ENSMODG00000009222 possible_ortholog 1 retrogene
retro_mdom_1126,
Mustela putorius furo ENSMPUG00000012061 ortholog_one2many 4 retrogenes
retro_mputfur_1207, retro_mputfur_21, retro_mputfur_838, retro_mputfur_942,
Nomascus leucogenys ENSNLEG00000016954 ortholog_one2many 3 retrogenes
retro_nleu_118, retro_nleu_2563, retro_nleu_2862,
Oryctolagus cuniculus ENSOCUG00000002107 ortholog_one2many 2 retrogenes
retro_ocun_1468, retro_ocun_84,
Otolemur garnettii ENSOGAG00000008824 ortholog_many2many 6 retrogenes
retro_ogar_1126, retro_ogar_1196, retro_ogar_1432, retro_ogar_1535, retro_ogar_209, retro_ogar_2326,
Ochotona princeps ENSOPRG00000015478 ortholog_one2many 7 retrogenes
retro_opri_1129, retro_opri_1155, retro_opri_16, retro_opri_40, retro_opri_506, retro_opri_830, retro_opri_86,
Petromyzon marinus ENSPMAG00000003323 possible_ortholog 1 retrogene
retro_pmar_12,
Pongo abelii ENSPPYG00000012430 ortholog_many2many 5 retrogenes
retro_pabe_1068, retro_pabe_1133, retro_pabe_115, retro_pabe_45, retro_pabe_599,
Pelodiscus sinensis ENSPSIG00000013173 possible_ortholog 1 retrogene
retro_psin_9,
Pan troglodytes ENSPTRG00000011901 ortholog_one2many 4 retrogenes
retro_ptro_1195, retro_ptro_2623, retro_ptro_83, retro_ptro_881,
Pteropus vampyrus ENSPVAG00000005183 ortholog_one2many 2 retrogenes
retro_pvam_558, retro_pvam_560,
Sorex araneus ENSSARG00000008731 ortholog_one2one 1 retrogene
retro_sara_119,
Sus scrofa ENSSSCG00000025768 within_species_paralog 3 retrogenes
retro_sscr_26, retro_sscr_390, retro_sscr_692,
Ictidomys tridecemlineatus ENSSTOG00000021814 ortholog_one2many 7 retrogenes
retro_itri_1048, retro_itri_1473, retro_itri_37, retro_itri_433, retro_itri_68, retro_itri_778, retro_itri_859,
Tupaia belangeri ENSTBEG00000000569 ortholog_one2many 17 retrogenes
retro_tbel_1450, retro_tbel_24, retro_tbel_2418, retro_tbel_258, retro_tbel_2612, retro_tbel_2856, retro_tbel_2933, retro_tbel_3150, retro_tbel_3195, retro_tbel_3956, retro_tbel_4141, retro_tbel_4171, retro_tbel_4212, retro_tbel_4324, retro_tbel_675, retro_tbel_722, retro_tbel_765,
Taeniopygia guttata ENSTGUG00000002581 ortholog_one2many 1 retrogene
retro_tgut_6,
Tarsius syrichta ENSTSYG00000012564 ortholog_one2many 5 retrogenes
retro_tsyr_1641, retro_tsyr_2012, retro_tsyr_2128, retro_tsyr_2148, retro_tsyr_576,
Vicugna pacos ENSVPAG00000009286 possible_ortholog 1 retrogene
retro_vpac_442,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_sscr_228 90.00 100.00
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Download FASTA sequences of all ENSSSCG00000008433 retrocopies