Parental gene:

CALM2, ENSEEUG00000000040

Aliases:None
Description:calmodulin 2 (phosphorylase kinase, delta) [Source:HGNC Symbol;Acc:1445]
Organism:Hedgehog (Erinaceus europaeus)
Coordinates:GeneScaffold_5941:74430..86214(-)


>ENSEEUG00000000040
GCTGACCAACTGACCGAAGAGCAGATTGCAGAATTCAAAGAAGCTTTTTCACTATTTGACAAGGATGGGGATGGAACTAT
AACAACAAAAGAATTGGGAACTGTAATGAGGTCTCTTGGGCAGAATCCTACAGAAGCAGAATTGCAGGACATGATTAATG
AAGTAGATGCTGATGGTAATGGCACAATCGACTTCCCAGAATTTCTGACCATGATGGCAAGAAAAATGAAAGATACAGAC
AGTGAAGAAGAAATTAGAGAAGCATTCCGTGTGTTTGATAAGGATGGTAATGGTTATATTAGTGCAGCTGAGCTTCGCCA
CGTGATGACAAACCTTGGAGAGAAGTTAACAGATGAAGAGGTTGATGAGATGATCAGGGAAGCAGATATTGATGGTGATG
GTCAAGTAAACTATGAAGAGTTTGTACAAATGATGACAGCAAAGTGA

Library Parental gene expression (RPM)
SRP017611_brain 484 .56 RPM
SRP017611_kidney 169 .91 RPM
SRP017611_liver 26 .21 RPM



Species Parental gene accession Homology type Retrogenes number
Anolis carolinensis ENSACAG00000015712 possible_ortholog 1 retrogene
retro_acar_45,
Choloepus hoffmanni ENSCHOG00000008245 ortholog_one2one 6 retrogenes
retro_chof_1940, retro_chof_2261, retro_chof_367, retro_chof_735, retro_chof_833, retro_chof_965,
Cavia porcellus ENSCPOG00000012181 possible_ortholog 3 retrogenes
retro_cpor_1012, retro_cpor_87, retro_cpor_89,
Erinaceus europaeus ENSEEUG00000000140 within_species_paralog 1 retrogene
retro_eeur_468,
Echinops telfairi ENSETEG00000009377 possible_ortholog 5 retrogenes
retro_etel_1062, retro_etel_1542, retro_etel_1812, retro_etel_587, retro_etel_854,
Echinops telfairi ENSETEG00000018667 ortholog_one2one 16 retrogenes
retro_etel_1032, retro_etel_1075, retro_etel_108, retro_etel_1164, retro_etel_1184, retro_etel_1507, retro_etel_1650, retro_etel_1683, retro_etel_1903, retro_etel_2139, retro_etel_22, retro_etel_539, retro_etel_687, retro_etel_864, retro_etel_902, retro_etel_951,
Ficedula albicollis ENSFALG00000012828 ortholog_one2one 1 retrogene
retro_falb_16,
Gadus morhua ENSGMOG00000009342 possible_ortholog 1 retrogene
retro_gmor_23,
Latimeria chalumnae ENSLACG00000005059 possible_ortholog 1 retrogene
retro_lcha_53,
Loxodonta africana ENSLAFG00000009865 possible_ortholog 1 retrogene
retro_lafr_655,
Myotis lucifugus ENSMLUG00000029016 possible_ortholog 6 retrogenes
retro_mluc_13, retro_mluc_1732, retro_mluc_18, retro_mluc_19, retro_mluc_2207, retro_mluc_2258,
Macaca mulatta ENSMMUG00000017466 possible_ortholog 1 retrogene
retro_mmul_256,
Monodelphis domestica ENSMODG00000009222 possible_ortholog 1 retrogene
retro_mdom_1126,
Otolemur garnettii ENSOGAG00000008824 possible_ortholog 6 retrogenes
retro_ogar_1126, retro_ogar_1196, retro_ogar_1432, retro_ogar_1535, retro_ogar_209, retro_ogar_2326,
Petromyzon marinus ENSPMAG00000003323 possible_ortholog 1 retrogene
retro_pmar_12,
Pongo abelii ENSPPYG00000012430 possible_ortholog 5 retrogenes
retro_pabe_1068, retro_pabe_1133, retro_pabe_115, retro_pabe_45, retro_pabe_599,
Pelodiscus sinensis ENSPSIG00000013173 possible_ortholog 1 retrogene
retro_psin_9,
Sus scrofa ENSSSCG00000008433 possible_ortholog 1 retrogene
retro_sscr_228,
Taeniopygia guttata ENSTGUG00000002581 ortholog_one2one 1 retrogene
retro_tgut_6,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_eeur_38 85.04 85.14
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2. retro_eeur_561 93.29 100.00
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3. retro_eeur_671 75.74 88.51
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Download FASTA sequences of all ENSEEUG00000000040 retrocopies