Parental gene:

CALM3, ENSLACG00000005059

Aliases:None
Description:None
Organism:Coelacanth (Latimeria chalumnae)
Coordinates:JH127922.1:150140..176008(-)


>ENSLACG00000005059
ATGGCTGATCAGCTTACTGAAGAACAGATCGCTGAGTTCAAGGAGGCCTTCTCCCTGTTTGATAAGGATGGCGATGGTAC
CATCACCACCAAAGAGCTGGGGACAGTGATGAGATCACTGGGACAGAACCCCACAGAGGCAGAACTTCAGGATATGATCA
ACGAGGTGGACGCTGATGGTAATGGAACAATTGATTTCCCAGAATTCCTGACTATGATGGCAAGAAAAATGAAGGATACT
GACAGCGAGGAAGAAATCCGGGAAGCATTCAGAGTGTTTGATAAAGATGGGAACGGCTACATCAGTGCGGCAGAGTTGCG
CCACGTCATGACAAACCTCGGTGAAAAACTAACCGATGAGGAGGTAGATGAAATGATCCGAGAAGCTGATATTGATGGTG
ATGGACAAGTTAACTATGAAGAATTTGTACAGATGATGACGGCAAAGTGA

Library Parental gene expression (RPM)
DRP000627_pectoral_fin 134 .47 RPM
DRP000627_kidney 257 .52 RPM
DRP000627_pelvic_fin 162 .06 RPM
DRP000627_pharynx 427 .20 RPM
DRP000627_gill 277 .40 RPM
DRP000627_tail_muscle 334 .36 RPM



Species Parental gene accession Homology type Retrogenes number
Anolis carolinensis ENSACAG00000015712 possible_ortholog 1 retrogene
retro_acar_45,
Ailuropoda melanoleuca ENSAMEG00000001801 possible_ortholog 4 retrogenes
retro_amel_1215, retro_amel_1714, retro_amel_265, retro_amel_811,
Ailuropoda melanoleuca ENSAMEG00000006204 possible_ortholog 2 retrogenes
retro_amel_63, retro_amel_72,
Choloepus hoffmanni ENSCHOG00000008245 possible_ortholog 6 retrogenes
retro_chof_1940, retro_chof_2261, retro_chof_367, retro_chof_735, retro_chof_833, retro_chof_965,
Callithrix jacchus ENSCJAG00000000638 possible_ortholog 4 retrogenes
retro_cjac_1039, retro_cjac_1401, retro_cjac_2859, retro_cjac_4097,
Callithrix jacchus ENSCJAG00000017740 possible_ortholog 3 retrogenes
retro_cjac_1418, retro_cjac_2564, retro_cjac_693,
Cavia porcellus ENSCPOG00000012181 possible_ortholog 3 retrogenes
retro_cpor_1012, retro_cpor_87, retro_cpor_89,
Dasypus novemcinctus ENSDNOG00000004645 possible_ortholog 9 retrogenes
retro_dnov_1093, retro_dnov_18, retro_dnov_1864, retro_dnov_1972, retro_dnov_2229, retro_dnov_241, retro_dnov_2522, retro_dnov_2674, retro_dnov_865,
Dipodomys ordii ENSDORG00000003200 possible_ortholog 6 retrogenes
retro_dord_108, retro_dord_113, retro_dord_201, retro_dord_212, retro_dord_29, retro_dord_5,
Equus caballus ENSECAG00000008396 possible_ortholog 4 retrogenes
retro_ecab_15, retro_ecab_59, retro_ecab_750, retro_ecab_882,
Equus caballus ENSECAG00000009162 possible_ortholog 1 retrogene
retro_ecab_279,
Erinaceus europaeus ENSEEUG00000000040 possible_ortholog 3 retrogenes
retro_eeur_38, retro_eeur_561, retro_eeur_671,
Echinops telfairi ENSETEG00000009377 possible_ortholog 5 retrogenes
retro_etel_1062, retro_etel_1542, retro_etel_1812, retro_etel_587, retro_etel_854,
Echinops telfairi ENSETEG00000018667 possible_ortholog 16 retrogenes
retro_etel_1032, retro_etel_1075, retro_etel_108, retro_etel_1164, retro_etel_1184, retro_etel_1507, retro_etel_1650, retro_etel_1683, retro_etel_1903, retro_etel_2139, retro_etel_22, retro_etel_539, retro_etel_687, retro_etel_864, retro_etel_902, retro_etel_951,
Ficedula albicollis ENSFALG00000012828 possible_ortholog 1 retrogene
retro_falb_16,
Felis catus ENSFCAG00000029141 possible_ortholog 5 retrogenes
retro_fcat_1926, retro_fcat_591, retro_fcat_629, retro_fcat_87, retro_fcat_88,
Homo sapiens ENSG00000198668 possible_ortholog 2 retrogenes
retro_hsap_1290, retro_hsap_3847,
Gallus gallus ENSGALG00000026445 possible_ortholog 1 retrogene
retro_ggal_9,
Gorilla gorilla ENSGGOG00000028540 possible_ortholog 1 retrogene
retro_ggor_2592,
Gadus morhua ENSGMOG00000009342 possible_ortholog 1 retrogene
retro_gmor_23,
Loxodonta africana ENSLAFG00000002905 possible_ortholog 1 retrogene
retro_lafr_1165,
Loxodonta africana ENSLAFG00000009865 possible_ortholog 1 retrogene
retro_lafr_655,
Meleagris gallopavo ENSMGAG00000013055 possible_ortholog 1 retrogene
retro_mgal_13,
Microcebus murinus ENSMICG00000004980 possible_ortholog 3 retrogenes
retro_mmur_314, retro_mmur_35, retro_mmur_45,
Myotis lucifugus ENSMLUG00000029016 possible_ortholog 6 retrogenes
retro_mluc_13, retro_mluc_1732, retro_mluc_18, retro_mluc_19, retro_mluc_2207, retro_mluc_2258,
Macaca mulatta ENSMMUG00000017466 possible_ortholog 1 retrogene
retro_mmul_256,
Monodelphis domestica ENSMODG00000002696 possible_ortholog 4 retrogenes
retro_mdom_137, retro_mdom_178, retro_mdom_185, retro_mdom_208,
Monodelphis domestica ENSMODG00000009222 possible_ortholog 1 retrogene
retro_mdom_1126,
Mustela putorius furo ENSMPUG00000008087 possible_ortholog 1 retrogene
retro_mputfur_523,
Mustela putorius furo ENSMPUG00000012061 possible_ortholog 4 retrogenes
retro_mputfur_1207, retro_mputfur_21, retro_mputfur_838, retro_mputfur_942,
Mus musculus ENSMUSG00000001175 possible_ortholog 4 retrogenes
retro_mmus_1519, retro_mmus_2859, retro_mmus_2871, retro_mmus_50,
Nomascus leucogenys ENSNLEG00000016954 possible_ortholog 3 retrogenes
retro_nleu_118, retro_nleu_2563, retro_nleu_2862,
Nomascus leucogenys ENSNLEG00000017040 possible_ortholog 3 retrogenes
retro_nleu_2039, retro_nleu_2093, retro_nleu_2648,
Ornithorhynchus anatinus ENSOANG00000015365 possible_ortholog 1 retrogene
retro_oana_9,
Oryctolagus cuniculus ENSOCUG00000002107 possible_ortholog 2 retrogenes
retro_ocun_1468, retro_ocun_84,
Oryctolagus cuniculus ENSOCUG00000011659 possible_ortholog 1 retrogene
retro_ocun_626,
Otolemur garnettii ENSOGAG00000008824 possible_ortholog 6 retrogenes
retro_ogar_1126, retro_ogar_1196, retro_ogar_1432, retro_ogar_1535, retro_ogar_209, retro_ogar_2326,
Otolemur garnettii ENSOGAG00000028089 possible_ortholog 1 retrogene
retro_ogar_1727,
Ochotona princeps ENSOPRG00000015478 possible_ortholog 7 retrogenes
retro_opri_1129, retro_opri_1155, retro_opri_16, retro_opri_40, retro_opri_506, retro_opri_830, retro_opri_86,
Petromyzon marinus ENSPMAG00000003323 possible_ortholog 1 retrogene
retro_pmar_12,
Pongo abelii ENSPPYG00000006060 possible_ortholog 1 retrogene
retro_pabe_1045,
Pongo abelii ENSPPYG00000012430 possible_ortholog 5 retrogenes
retro_pabe_1068, retro_pabe_1133, retro_pabe_115, retro_pabe_45, retro_pabe_599,
Pelodiscus sinensis ENSPSIG00000013173 possible_ortholog 1 retrogene
retro_psin_9,
Pan troglodytes ENSPTRG00000006626 possible_ortholog 1 retrogene
retro_ptro_3043,
Pan troglodytes ENSPTRG00000011901 possible_ortholog 4 retrogenes
retro_ptro_1195, retro_ptro_2623, retro_ptro_83, retro_ptro_881,
Pteropus vampyrus ENSPVAG00000005183 possible_ortholog 2 retrogenes
retro_pvam_558, retro_pvam_560,
Pteropus vampyrus ENSPVAG00000010028 possible_ortholog 1 retrogene
retro_pvam_1274,
Rattus norvegicus ENSRNOG00000004060 possible_ortholog 3 retrogenes
retro_rnor_318, retro_rnor_389, retro_rnor_392,
Sorex araneus ENSSARG00000008731 possible_ortholog 1 retrogene
retro_sara_119,
Sus scrofa ENSSSCG00000008433 possible_ortholog 1 retrogene
retro_sscr_228,
Sus scrofa ENSSSCG00000025768 possible_ortholog 3 retrogenes
retro_sscr_26, retro_sscr_390, retro_sscr_692,
Ictidomys tridecemlineatus ENSSTOG00000021814 possible_ortholog 7 retrogenes
retro_itri_1048, retro_itri_1473, retro_itri_37, retro_itri_433, retro_itri_68, retro_itri_778, retro_itri_859,
Tupaia belangeri ENSTBEG00000000569 possible_ortholog 17 retrogenes
retro_tbel_1450, retro_tbel_24, retro_tbel_2418, retro_tbel_258, retro_tbel_2612, retro_tbel_2856, retro_tbel_2933, retro_tbel_3150, retro_tbel_3195, retro_tbel_3956, retro_tbel_4141, retro_tbel_4171, retro_tbel_4212, retro_tbel_4324, retro_tbel_675, retro_tbel_722, retro_tbel_765,
Taeniopygia guttata ENSTGUG00000002581 possible_ortholog 1 retrogene
retro_tgut_6,
Tarsius syrichta ENSTSYG00000012564 possible_ortholog 5 retrogenes
retro_tsyr_1641, retro_tsyr_2012, retro_tsyr_2128, retro_tsyr_2148, retro_tsyr_576,
Tursiops truncatus ENSTTRG00000013584 possible_ortholog 2 retrogenes
retro_ttru_1637, retro_ttru_1699,
Vicugna pacos ENSVPAG00000004563 possible_ortholog 1 retrogene
retro_vpac_472,
Vicugna pacos ENSVPAG00000009286 possible_ortholog 1 retrogene
retro_vpac_442,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_lcha_53 78.64 69.13
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Download FASTA sequences of all ENSLACG00000005059 retrocopies