RetrogeneDB ID: retro_ggor_2576

Retrocopy location

• Organism: Gorilla (Gorilla gorilla)
• Coordinates: 7:24828443..24828711(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: SUMO2
• Ensembl ID: ENSGGOG00000023769
• Aliases: None
• Description: None

Sequence

>retro_ggor_2576
ATGGCTGACAAAAAGCCCAAGAAAGGAGTCAAGACCCAAAAAAATAACCATATAGAGTTGCAGTGGTGGGGTGGAATGGT
TCAGTGGTACAGCTCCAGAGTACATCACTTAGCAAACTAATGAGAGCCTATTGTTAACAACTGATCTATCAATGAGGCAA
CTTGGTTTTGGATGTGATGGGAGGCCAATTAATGAAACACCTGTACAGGTGAAAATGGAAGATGAAGATATAATTGATGT
GTATACAAAGCAGACAGGAAGTATCTAC

Alignment

ORF - retro_ggor_2576 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 58.76 %
• Parental protein coverage: 100.0 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 2

Retrocopy - Parental Gene Alignment:

Parental  MADEKPKEGVKTENNDHINLK-VAGQDGSVVQFKIKRHTPLSKLMKAYCER-QGLSMRQIRFRFDGQPIN
          MAD.KPK.GVKT..N.HI.L..V.G..GSVVQ......T.LSKLM.AYC.....LSMRQ..F..DG.PIN
Retrocopy MADKKPKKGVKTQKNNHIELQ<VVGWNGSVVQLQ---STSLSKLMRAYC*Q<TDLSMRQLGFGCDGRPIN

Parental  ETDTPAQLEMEDEDTIDVFQQQTGGVY
          E..TP.Q..MEDED.IDV...QTG..Y
Retrocopy E--TPVQVKMEDEDIIDVYTKQTGSIY

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Expression validation based on RNA-Seq data:

Library	Retrocopy expression	Parental gene expression
SRP007412_brain_prefrontal_cortex	0.00 RPM	7.29 RPM
SRP007412_cerebellum	0.00 RPM	10.20 RPM
SRP007412_heart	0.00 RPM	3.00 RPM
SRP007412_kidney	0.00 RPM	3.93 RPM
SRP007412_liver	0.00 RPM	3.30 RPM
SRP007412_testis	0.00 RPM	10.05 RPM

ChIP-Seq

Gorilla gorilla was not studied using ChIP-Seq data.

EST

Gorilla gorilla was not studied using EST data.

TSS

Gorilla gorilla was not studied using FANTOM5 data.

Lab

retro_ggor_2576 was not experimentally validated.

Homology

Retrocopy orthology:

Retrocopy retro_ggor_2576 has 1 orthologous retrocopies within eutheria group .

Species	RetrogeneDB ID
Pan troglodytes	retro_ptro_2605

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Parental genes homology:

Parental genes homology involve 10 parental genes, and 66 retrocopies.

Species	Parental gene accession	Retrocopies number
Canis familiaris	ENSCAFG00000004724	1 retrocopy	retro_cfam_484,
Homo sapiens	ENSG00000188612	2 retrocopies	retro_hsap_4036, retro_hsap_4095,
Gorilla gorilla	ENSGGOG00000023769	3 retrocopies	retro_ggor_101, retro_ggor_184, retro_ggor_2576 ,
Gorilla gorilla	ENSGGOG00000026439	5 retrocopies	retro_ggor_1451, retro_ggor_1550, retro_ggor_299, retro_ggor_311, retro_ggor_725,
Loxodonta africana	ENSLAFG00000025811	10 retrocopies	retro_lafr_104, retro_lafr_1222, retro_lafr_1240, retro_lafr_200, retro_lafr_254, retro_lafr_324, retro_lafr_36, retro_lafr_488, retro_lafr_858, retro_lafr_888,
Monodelphis domestica	ENSMODG00000007222	11 retrocopies	retro_mdom_1263, retro_mdom_1472, retro_mdom_1474, retro_mdom_1560, retro_mdom_1598, retro_mdom_1755, retro_mdom_237, retro_mdom_378, retro_mdom_517, retro_mdom_788, retro_mdom_986,
Mus musculus	ENSMUSG00000020738	19 retrocopies	retro_mmus_1498, retro_mmus_1772, retro_mmus_1903, retro_mmus_2050, retro_mmus_2323, retro_mmus_2475, retro_mmus_2492, retro_mmus_2590, retro_mmus_2767, retro_mmus_2917, retro_mmus_2974, retro_mmus_3209, retro_mmus_3414, retro_mmus_3630, retro_mmus_415, retro_mmus_611, retro_mmus_689, retro_mmus_818, retro_mmus_827,
Oryctolagus cuniculus	ENSOCUG00000028195	5 retrocopies	retro_ocun_110, retro_ocun_136, retro_ocun_175, retro_ocun_22, retro_ocun_46,
Pongo abelii	ENSPPYG00000029777	2 retrocopies	retro_pabe_164, retro_pabe_84,
Sorex araneus	ENSSARG00000005720	8 retrocopies	retro_sara_156, retro_sara_158, retro_sara_175, retro_sara_389, retro_sara_70, retro_sara_717, retro_sara_749, retro_sara_93,