RetrogeneDB ID:

retro_mdom_237

Retrocopy
location
Organism:Opossum (Monodelphis domestica)
Coordinates:2:81134270..81134558(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:ENSMODG00000024906
Aliases:None
Status:KNOWN_PROTEIN_CODING
Parental gene
information
Parental gene summary:
Parental gene symbol:None
Ensembl ID:ENSMODG00000007222
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_mdom_237
ATGGCCGACGAGAAGCCGAAGGAAGGAGTCAAGACTAAAAACAACGACCACATTAATCTGAAGGTGGCAGGGCAGGATGG
CTCAGTGGTACAGTTTAAGATCAAGAGGCACACACCATTCAGTAAACTGATGAAAGCCTATTGTGAACGGCAGGGTTTGT
CCATGAGGCAGATCCGATTCCGATTCGATGGGCAGCCAATCAATGAAACAGATACACCCGCACAGTTGGAAATGGAGGAC
GAAGATACAATCGATGTATTCCAGCAGCAGACGGGAGGCATTTACTAA

ORF - retro_mdom_237 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 97.89 %
Parental protein coverage: 100. %
Number of stop codons detected: 0
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalMADEKPKEGVKTENNDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINET
MADEKPKEGVKT.NNDHINLKVAGQDGSVVQFKIKRHTP.SKLMKAYCERQGLSMRQIRFRFDGQPINET
RetrocopyMADEKPKEGVKTKNNDHINLKVAGQDGSVVQFKIKRHTPFSKLMKAYCERQGLSMRQIRFRFDGQPINET
ParentalDTPAQLEMEDEDTIDVFQQQTGGIY
DTPAQLEMEDEDTIDVFQQQTGGIY
RetrocopyDTPAQLEMEDEDTIDVFQQQTGGIY

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)

Expression validation based on RNA-Seq data:
Library Retrocopy expression Parental gene expression
SRP007412_brain 0 .00 RPM 0 .00 RPM
SRP007412_cerebellum 0 .00 RPM 0 .00 RPM
SRP007412_heart 0 .00 RPM 0 .00 RPM
SRP007412_kidney 0 .00 RPM 0 .00 RPM
SRP007412_liver 0 .00 RPM 0 .00 RPM
SRP007412_testis 0 .00 RPM 0 .00 RPM
Monodelphis domestica was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_mdom_237 retrocopy.
Monodelphis domestica was not studied using FANTOM5 data.
retro_mdom_237 was not experimentally validated.

Retrocopy orthology:
Monodelphis domestica does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 13 parental genes, and 117 retrocopies.

Species Parental gene accession Retrocopies number
Ailuropoda melanoleuca ENSAMEG0000000918913 retrocopies
Canis familiaris ENSCAFG000000047241 retrocopy
Cavia porcellus ENSCPOG000000045819 retrocopies
Homo sapiens ENSG000001886122 retrocopies
Gorilla gorilla ENSGGOG000000237693 retrocopies
Loxodonta africana ENSLAFG0000002581110 retrocopies
Monodelphis domestica ENSMODG00000007222 11 retrocopies
Mus musculus ENSMUSG0000002073819 retrocopies
Oryctolagus cuniculus ENSOCUG000000281955 retrocopies
Pongo abelii ENSPPYG000000297772 retrocopies
Pan troglodytes ENSPTRG0000004219919 retrocopies
Sorex araneus ENSSARG000000057208 retrocopies
Sus scrofa ENSSSCG0000001721215 retrocopies



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