Parental gene:

ENSLAFG00000025811

Aliases:None
Description:None
Organism:Elephant (Loxodonta africana)
Coordinates:scaffold_49:7263984..7274244(+)


>ENSLAFG00000025811
ATGGCCGACGAAAAACCCAAGGAAGGAGTCAAGACTGAGAACAACGATCATATTAATTTGAAGGTGGCGGGGCAGGATGG
TTCTGTGGTGCAGTTTAAGATTAAAAGGCATACACCACTTAGTAAACTAATGAAAGCCTATTGTGAACGACAGGGTTTGT
CAATGAGGCAGATCAGATTCCGATTTGACGGGCAGCCAATCAATGAAACAGACACACCTGCACAGTTGGAAATGGAGGAT
GAAGATACAATTGATGTGTTTCAGCAGCAGACAGGAGGTGTCTTCTAA

Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000009189 possible_ortholog 13 retrogenes
retro_amel_1097, retro_amel_1125, retro_amel_1199, retro_amel_1263, retro_amel_1434, retro_amel_152, retro_amel_1665, retro_amel_276, retro_amel_35, retro_amel_616, retro_amel_653, retro_amel_662, retro_amel_722,
Canis familiaris ENSCAFG00000004724 ortholog_one2one 1 retrogene
retro_cfam_484,
Cavia porcellus ENSCPOG00000004581 possible_ortholog 9 retrogenes
retro_cpor_1029, retro_cpor_1297, retro_cpor_1496, retro_cpor_202, retro_cpor_357, retro_cpor_823, retro_cpor_838, retro_cpor_869, retro_cpor_894,
Homo sapiens ENSG00000188612 possible_ortholog 2 retrogenes
retro_hsap_4036, retro_hsap_4095,
Gorilla gorilla ENSGGOG00000023769 ortholog_one2one 3 retrogenes
retro_ggor_101, retro_ggor_184, retro_ggor_2576,
Loxodonta africana ENSLAFG00000022855 within_species_paralog 5 retrogenes
retro_lafr_111, retro_lafr_1148, retro_lafr_189, retro_lafr_540, retro_lafr_951,
Monodelphis domestica ENSMODG00000007222 possible_ortholog 11 retrogenes
retro_mdom_1263, retro_mdom_1472, retro_mdom_1474, retro_mdom_1560, retro_mdom_1598, retro_mdom_1755, retro_mdom_237, retro_mdom_378, retro_mdom_517, retro_mdom_788, retro_mdom_986,
Mus musculus ENSMUSG00000020738 ortholog_one2one 19 retrogenes
retro_mmus_1498, retro_mmus_1772, retro_mmus_1903, retro_mmus_2050, retro_mmus_2323, retro_mmus_2475, retro_mmus_2492, retro_mmus_2590, retro_mmus_2767, retro_mmus_2917, retro_mmus_2974, retro_mmus_3209, retro_mmus_3414, retro_mmus_3630, retro_mmus_415, retro_mmus_611, retro_mmus_689, retro_mmus_818, retro_mmus_827,
Oryctolagus cuniculus ENSOCUG00000028195 possible_ortholog 5 retrogenes
retro_ocun_110, retro_ocun_136, retro_ocun_175, retro_ocun_22, retro_ocun_46,
Pongo abelii ENSPPYG00000029777 possible_ortholog 2 retrogenes
retro_pabe_164, retro_pabe_84,
Pan troglodytes ENSPTRG00000042199 possible_ortholog 19 retrogenes
retro_ptro_1004, retro_ptro_1183, retro_ptro_1263, retro_ptro_135, retro_ptro_143, retro_ptro_1775, retro_ptro_2051, retro_ptro_2147, retro_ptro_2212, retro_ptro_2247, retro_ptro_2252, retro_ptro_2400, retro_ptro_2463, retro_ptro_2528, retro_ptro_2605, retro_ptro_2666, retro_ptro_2759, retro_ptro_3260, retro_ptro_65,
Sorex araneus ENSSARG00000005720 possible_ortholog 8 retrogenes
retro_sara_156, retro_sara_158, retro_sara_175, retro_sara_389, retro_sara_70, retro_sara_717, retro_sara_749, retro_sara_93,
Sus scrofa ENSSSCG00000017212 possible_ortholog 15 retrogenes
retro_sscr_1112, retro_sscr_1132, retro_sscr_1147, retro_sscr_1148, retro_sscr_123, retro_sscr_249, retro_sscr_277, retro_sscr_409, retro_sscr_591, retro_sscr_684, retro_sscr_754, retro_sscr_765, retro_sscr_814, retro_sscr_847, retro_sscr_969,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_lafr_36 82.98 98.95
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2. retro_lafr_104 76.84 100.00
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3. retro_lafr_200 80.36 58.95
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4. retro_lafr_254 69.70 67.37
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5. retro_lafr_324 75.00 100.00
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6. retro_lafr_488 86.32 100.00
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7. retro_lafr_858 74.23 100.00
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8. retro_lafr_888 85.87 96.84
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9. retro_lafr_1222 75.82 95.79
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10. retro_lafr_1240 87.36 90.53
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Download FASTA sequences of all ENSLAFG00000025811 retrocopies