RetrogeneDB ID: retro_hsap_57

Retrocopy location

• Organism: Human (Homo sapiens)
• Coordinates: 9:6012289..6015607(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSG00000137040
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: IPO5
• Ensembl ID: ENSG00000065150
• Aliases: IPO5, IMB3, KPNB3, Pse1, RANBP5, imp5
• Description: importin 5 [Source:HGNC Symbol;Acc:6402]

Sequence

>retro_hsap_57
ATGGCGGCAACCGCGTCTGCAGGGGTGCCGGCGACCGTGTCAGAAAAGCAAGAGTTTTACCAGCTTCTGAAGAACCTGAT
CAATCCAAGCTGTATGGTGCGGAGGCAAGCAGAGGAAATCTATGAAAATATCCCAGGTCTGTGTAAGACTACCTTCCTCT
TAGATGCCGTCAGAAATAGAAGAGCAGGTTATGAGGTGAGACAAATGGCTGCCGCACTGCTACGACGGCTTTTGTCCTCT
GGGTTTGAGGAGGTTTATCCAAATCTGCCTGCTGATGTTCAGAGAGATGTCAAGATTGAACTGATTCTGGCTGTTAAGTT
AGAAACACATGCTAGCATGAGGAAAAAACTTTGTGATATTTTTGCAGTGCTGGCCAGGAATTTGATAGATGAGGATGGCA
CTAACCACTGGCCGGAAGGTCTGAAGTTTCTTATTGATTCAATCTACTCCAAAAATGTGGTTCTATGGGAAGTTGCACTT
CACGTTTTCTGGCACTTTCCTGGGATTTTTGGGACCCAAGAGCGGCATGATTTGGATATCATCAAACGGTTGTTGGACCA
GTGTATTCAAGATCAAGAACATCCAGCAATCAGGACATTATCCGCTAGAGCTGCAGCTGCATTTGTACTTGCTAATGAGA
ATAATATTGCTCTTTTCAAAGACTTTGCAGACTTGCTTCCTGGAATCTTACAGGCTGTGAATGACTCATGCTACCAGGAT
GATGATTCAGTGCTAGAATCCCTTGTTGAGATTGCAGATACCGTACCTAAGTACTTGGGTCCTTATTTAGAAGATACTCT
ACAGTTGAGTTTGAAGTTATGTGGAGACTCTAGGCTTAGTAATCTGCAGCGCCAGCTGGCCCTCGAAGTTATAGTGACCT
TGTCTGAAACTGCCACTCCGATGTTGAAAAAACATACAAATATTATTGCACAGGCAGTTCCTCATATATTAGCAATGATG
GTTGATCTACAAGATGATGAGGACTGGGTAAATGCTGATGAAATGGAAGAAGATGATTTTGACAGCAATGCAGTTGCTGC
GGAGAGTGCACTAGACAGACTGGCTTGTGGGCTTGGTGGAAAAGTTGTTTTACCAATGACCAAGGAGCATATCATGCAGA
TGCTTCAGAGCCCTGACTGGAAGTATCGACATGCTGGATTAATGGCCTTATCTGCCATTGGAGAAGGATGCCATCAACAA
ATGGAATCAATTCTAGATGAAACAGTTAACTCCGTTTTGCTTTTTCTTCAGGATCCTCATCCAAGGGTGAGGGCTGCAGC
CTGTACTACACTTGGACAGATGGCTACAGATTTTGCACCTAATTTCCAAAAGAAATTTCATGAAACAGTGATTGCAGCTC
TGTTACGTACCATGGAAAATCAAGGTAATCAGCGTGTGCAATCACATGCAGCTTCTGCTCTTATTATTTTTATTGAAGAC
TGCCCTAAATCATTGCTAGTTCTATATGTGGATAGTATGGTGAAAAATCTACATTCCGTCTTGGTGATTAAACTTCAAGA
GTTGATTCGGAATGGAACTAAGTTGGCTTTGGAACAACTTGTGACAACCATTGCATCAGTTGCAGATACAATAGAAGAAA
AATTTGTCCCATATTATGATATATTCATGCCCTCACTAAAGCACATTGTTGAGCTTGCTGTTCAGAAGGAACTCAAGCTT
CTGAGAGGAAAAACTATCGAGTGCATTAGCCATATTGGTCTTGCTGTTGGGAAGGAAAAATTTATGCAAGATGCATCAAA
TGTGATGCAGCTGTTGTTGAAGACACAATCAGACTTAAATAATATGGAAGATGATGACCCTCAGACCTCTTACATGGTTT
CAGCATGGGCTAGAATGTGTAAAATTCTTGGAAAAGATTTTCAACAGTACCTTCCACTGGTTATCGAGCCTCTTATTAAG
ACTGCTTCAGCTAAACCTGATGTTGCTCTCTTAGACACACAGGATGTGGAAAATATGAGTGACGATGATGGCTGGCAATT
TGTAAATCTTGGAGACCAGCAGAGTTTTGGAATTAAAACTTCAGGACTTGAAGCAAAAGCAACTGCTTGCCAAATGTTGG
TTTACTATGCTAAGGAGTTAAGGGAAGGGTTTGTGGAATATACAGAACAAGTTGTGAAGCTGATGGTTCCTTTACTGAAA
TTTTATTTCCATGACAATGTTCGAGTGGCAGCAGCAGAGTCCATGCCTTTTCTCCTGGAATGTGCAAGAATTCGTGGCCC
AGAGTATCTTGCACAGATGTGGCAATTCATATGTGACCCCTTAATCAAGGCTATTGGTACTGAACCAGATACAGATGTGC
TCTCAGAAATAATGAATTCTTTTGCAAAGTCCATTGAAGTTATGGGAGATGGTTGCCTTAATGATGAACACTTGGAAGAA
CTGGGAGGAATACTGAAAGCAAAACTTGAAGGGCACTTTAAAAACCAAGAATTGAGACAGGTGAAAAGACAGGAAGAAAA
CTATGATCAACAGGTTGAGATGTCTCTGCAAGATGAGGATGAATGTGATGTTTATATTCTGACCAAAGTATCAGATATTT
TGCACTCATTATTTAGTACTTATAAGGAAAAGATTTTACCATGGTTTGAACAACTACTTCCATTAATTGTAAATCTAATT
TGTTCAAGTAGGCCATGGCCAGACAGACAGTGGGGATTGTGCATATTTGATGACATCATAGAGCACTGCAGTCCAACTTC
ATTTAAATATGTAGAATATTTTCGGTGGCCAATGCTACTAAATATGCGAGATAACAACCCTGAAGTCAGGCAAGCTGCTG
CTTATGGCCTGGGTGTCATGGCACAGTTTGGTGGAGATGATTATCGTTCTTTATGTTCAGAAGCTGTTCCACTTCTGGTA
AAAGTTATTAAGTGTGCAAATTCCAAAACCAAAAAAAATGTCATTGCTACAGAGAACTGTATCTCAGCAATAGGGAAGAT
TTTGAAGTTTAAGCCTAACTGTGTAAATGTAGATGAAGTTCTTCCACACTGGTTATCATGGCTTCCACTGCATGAAGATA
AAGAGGAAGCTATTCAGACTTTGAGTTTTCTCTGTGACCTAATTGAAAGTAACCACCCAGTTGTAATTGGTCCAAATAAT
TCCAATCTTCCCAAAATAATCAGTATAATTGCAGAAGGAAAAATTAATGAGACTATTAACTATGAGGATCCTTGTGCCAA
ACGCCTAGCTAATGTCGTGCGTCAGGTACAGACTTCTGAAGATTTATGGTTGGAATGTGTATCACAACTTGATGATGAAC
AGCAGGAAGCCTTACAGGAGTTGCTAAATTTTGCTTGA

Alignment

ORF - retro_hsap_57 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 79.07 %
• Parental protein coverage: 98.57 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  SAMAAAAAEQQQFYLLLGNLLSPDNVVRKQAEETYENIPGQSKITFLLQAIRNTTAAEEARQMAAVLLRR
          ....A...E.Q.FY.LL.NL..P...VR.QAEE.YENIPG..K.TFLL.A.RN..A..E.RQMAA.LLRR
Retrocopy AGVPATVSEKQEFYQLLKNLINPSCMVRRQAEEIYENIPGLCKTTFLLDAVRNRRAGYEVRQMAAALLRR

Parental  LLSSAFDEVYPALPSDVQTAIKSELLMIIQMETQSSMRKKVCDIAAELARNLIDEDGNNQWPEGLKFLFD
          LLSS.F.EVYP.LP.DVQ...K.EL......ET..SMRKK.CDI.A.LARNLIDEDG.N.WPEGLKFL.D
Retrocopy LLSSGFEEVYPNLPADVQRDVKIELILAVKLETHASMRKKLCDIFAVLARNLIDEDGTNHWPEGLKFLID

Parental  SVSSQNVGLREAALHIFWNFPGIFGNQQQHYLDVIKRMLVQCMQDQEHPSIRTLSARATAAFILANEHNV
          S..S.NV.L.E.ALH.FW.FPGIFG.Q..H.LD.IKR.L.QC.QDQEHP.IRTLSARA.AAF.LANE.N.
Retrocopy SIYSKNVVLWEVALHVFWHFPGIFGTQERHDLDIIKRLLDQCIQDQEHPAIRTLSARAAAAFVLANENNI

Parental  ALFKHFADLLPGFLQAVNDSCYQNDDSVLKSLVEIADTVPKYLRPHLEATLQLSLKLCGDTSLNNMQRQL
          ALFK.FADLLPG.LQAVNDSCYQ.DDSVL.SLVEIADTVPKYL.P.LE.TLQLSLKLCGD..L.N.QRQL
Retrocopy ALFKDFADLLPGILQAVNDSCYQDDDSVLESLVEIADTVPKYLGPYLEDTLQLSLKLCGDSRLSNLQRQL

Parental  ALEVIVTLSETAAAMLRKHTNIVAQTIPQMLAMMVDLEEDEDWANADELEDDDFDSNAVAGESALDRMAC
          ALEVIVTLSETA..ML.KHTNI.AQ..P..LAMMVDL..DEDW.NADE.E.DDFDSNAVA.ESALDR.AC
Retrocopy ALEVIVTLSETATPMLKKHTNIIAQAVPHILAMMVDLQDDEDWVNADEMEEDDFDSNAVAAESALDRLAC

Parental  GLGGKLVLPMIKEHIMQMLQNPDWKYRHAGLMALSAIGEGCHQQMEGILNEIVNFVLLFLQDPHPRVRYA
          GLGGK.VLPM.KEHIMQMLQ.PDWKYRHAGLMALSAIGEGCHQQME.IL.E.VN.VLLFLQDPHPRVR.A
Retrocopy GLGGKVVLPMTKEHIMQMLQSPDWKYRHAGLMALSAIGEGCHQQMESILDETVNSVLLFLQDPHPRVRAA

Parental  ACNAVGQMATDFAPGFQKKFHEKVIAALLQTMEDQGNQRVQAHAAAALINFTEDCPKSLLIPYLDNLVKH
          AC...GQMATDFAP.FQKKFHE.VIAALL.TME.QGNQRVQ.HAA.ALI.F.EDCPKSLL..Y.D..VK.
Retrocopy ACTTLGQMATDFAPNFQKKFHETVIAALLRTMENQGNQRVQSHAASALIIFIEDCPKSLLVLYVDSMVKN

Parental  LHSIMVLKLQELIQKGTKLVLEQVVTSIASVADTAEEKFVPYYDLFMPSLKHIVENAVQKELRLLRGKTI
          LHS..V.KLQELI..GTKL.LEQ.VT.IASVADT.EEKFVPYYD.FMPSLKHIVE.AVQKEL.LLRGKTI
Retrocopy LHSVLVIKLQELIRNGTKLALEQLVTTIASVADTIEEKFVPYYDIFMPSLKHIVELAVQKELKLLRGKTI

Parental  ECISLIGLAVGKEKFMQDASDVMQLLLKTQTDFNDMEDDDPQISYMISAWARMCKILGKEFQQYLPVVMG
          ECIS.IGLAVGKEKFMQDAS.VMQLLLKTQ.D.N.MEDDDPQ.SYM.SAWARMCKILGK.FQQYLP.V..
Retrocopy ECISHIGLAVGKEKFMQDASNVMQLLLKTQSDLNNMEDDDPQTSYMVSAWARMCKILGKDFQQYLPLVIE

Parental  PLMKTASIKPEVALLDTQDMENMSDDDGWEFVNLGDQQSFGIKTAGLEEKSTACQMLVCYAKELKEGFVE
          PL.KTAS.KP.VALLDTQD.ENMSDDDGW.FVNLGDQQSFGIKT.GLE.K.TACQMLV.YAKEL.EGFVE
Retrocopy PLIKTASAKPDVALLDTQDVENMSDDDGWQFVNLGDQQSFGIKTSGLEAKATACQMLVYYAKELREGFVE

Parental  YTEQVVKLMVPLLKFYFHDGVRVAAAESMPLLLECARVRGPEYLTQMWHFMCDALIKAIGTEPDSDVLSE
          YTEQVVKLMVPLLKFYFHD.VRVAAAESMP.LLECAR.RGPEYL.QMW.F.CD.LIKAIGTEPD.DVLSE
Retrocopy YTEQVVKLMVPLLKFYFHDNVRVAAAESMPFLLECARIRGPEYLAQMWQFICDPLIKAIGTEPDTDVLSE

Parental  IMHSFAKCIEVMGDGCLNNEHFEELGGILKAKLEEHFKNQELRQVKRQDEDYDEQVEESLQDEDDNDVYI
          IM.SFAK.IEVMGDGCLN.EH.EELGGILKAKLE.HFKNQELRQVKRQ.E.YD.QVE.SLQDED..DVYI
Retrocopy IMNSFAKSIEVMGDGCLNDEHLEELGGILKAKLEGHFKNQELRQVKRQEENYDQQVEMSLQDEDECDVYI

Parental  LTKVSDILHSIFSSYKEKVLPWFEQLLPLIVNLICPHRPWPDRQWGLCIFDDVIEHCSPASFKYAEYFLR
          LTKVSDILHS.FS.YKEK.LPWFEQLLPLIVNLIC..RPWPDRQWGLCIFDD.IEHCSP.SFKY.EYF..
Retrocopy LTKVSDILHSLFSTYKEKILPWFEQLLPLIVNLICSSRPWPDRQWGLCIFDDIIEHCSPTSFKYVEYFRW

Parental  PMLQYVCDNSPEVRQAAAYGLGVMAQYGGDNYRPFCTEALPLLVRVIQSADSKTKENVNATENCISAVGK
          PML....DN.PEVRQAAAYGLGVMAQ.GGD.YR..C.EA.PLLV.VI..A.SKTK.NV.ATENCISA.GK
Retrocopy PMLLNMRDNNPEVRQAAAYGLGVMAQFGGDDYRSLCSEAVPLLVKVIKCANSKTKKNVIATENCISAIGK

Parental  IMKFKPDCVNVEEVLPHWLSWLPLHEDKEEAVQTFNYLCDLIESNHPIVLGPNNTNLPKIFSIIAEGEMH
          I.KFKP.CVNV.EVLPHWLSWLPLHEDKEEA.QT...LCDLIESNHP.V.GPNN.NLPKI.SIIAEG...
Retrocopy ILKFKPNCVNVDEVLPHWLSWLPLHEDKEEAIQTLSFLCDLIESNHPVVIGPNNSNLPKIISIIAEGKIN

Parental  EAIKHEDPCAKRLANVVRQVQTSGGLWTECIAQLSPEQQAAIQELLNSA
          E.I..EDPCAKRLANVVRQVQTS..LW.EC..QL..EQQ.A.QELLN.A
Retrocopy ETINYEDPCAKRLANVVRQVQTSEDLWLECVSQLDDEQQEALQELLNFA

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Expression validation based on RNA-Seq data:

Library	Retrocopy expression	Parental gene expression
bodymap2_adipose	12.38 RPM	222.71 RPM
bodymap2_adrenal	25.63 RPM	178.80 RPM
bodymap2_brain	45.19 RPM	200.23 RPM
bodymap2_breast	20.06 RPM	219.09 RPM
bodymap2_colon	11.72 RPM	250.15 RPM
bodymap2_heart	24.61 RPM	162.49 RPM
bodymap2_kidney	27.20 RPM	147.64 RPM
bodymap2_liver	9.12 RPM	63.33 RPM
bodymap2_lung	7.63 RPM	171.10 RPM
bodymap2_lymph_node	30.72 RPM	164.28 RPM
bodymap2_ovary	30.11 RPM	371.79 RPM
bodymap2_prostate	13.67 RPM	267.56 RPM
bodymap2_skeletal_muscle	6.98 RPM	426.43 RPM
bodymap2_testis	17.51 RPM	602.34 RPM
bodymap2_thyroid	39.41 RPM	260.98 RPM
bodymap2_white_blood_cells	35.52 RPM	132.36 RPM

ChIP-Seq

RNA Polymerase II actvity may be related with retro_hsap_57 in 49 libraries

ENCODE library ID	Target	ChIP-Seq Peak coordinates
ENCFF002CFW	POLR2A	9:6015438..6015882
ENCFF002CFX	POLR2A	9:6015454..6015896
ENCFF002CGN	POLR2A	9:6015494..6015872
ENCFF002CHO	POLR2A	9:6015388..6015950
ENCFF002CIH	POLR2A	9:6015338..6015842
ENCFF002CIO	POLR2A	9:6015457..6015894
ENCFF002CJE	POLR2A	9:6015336..6015965
ENCFF002CJZ	POLR2A	9:6015408..6015901
ENCFF002CKX	POLR2A	9:6015467..6015901
ENCFF002CLM	POLR2A	9:6015494..6016034
ENCFF002CMI	POLR2A	9:6015399..6015928
ENCFF002COJ	POLR2A	9:6015369..6015805
ENCFF002CPG	POLR2A	9:6015677..6015863
ENCFF002CPH	POLR2A	9:6015424..6015814
ENCFF002CQA	POLR2A	9:6015652..6015932
ENCFF002CQC	POLR2A	9:6015489..6015868
ENCFF002CQE	POLR2A	9:6015441..6015882
ENCFF002CQG	POLR2A	9:6015509..6015776
ENCFF002CQI	POLR2A	9:6015576..6015836
ENCFF002CQK	POLR2A	9:6015443..6015901
ENCFF002CQM	POLR2A	9:6015476..6015867
ENCFF002CQO	POLR2A	9:6015489..6015876
ENCFF002CRK	POLR2A	9:6015482..6016006
ENCFF002CSY	POLR2A	9:6015380..6015816
ENCFF002CUP	POLR2A	9:6015551..6015673
ENCFF002CUQ	POLR2A	9:6015602..6015860
ENCFF002CVJ	POLR2A	9:6015278..6015888
ENCFF002CXM	POLR2A	9:6015503..6015993
ENCFF002CXN	POLR2A	9:6015354..6015850
ENCFF002CXO	POLR2A	9:6015700..6015858
ENCFF002CXP	POLR2A	9:6015492..6015875
ENCFF002CXP	POLR2A	9:6015492..6015880
ENCFF002CXR	POLR2A	9:6015493..6015871
ENCFF002CZC	POLR2A	9:6015395..6015757
ENCFF002CZC	POLR2A	9:6015671..6015909
ENCFF002CZD	POLR2A	9:6015417..6015716
ENCFF002CZD	POLR2A	9:6015553..6016063
ENCFF002CZQ	POLR2A	9:6015422..6015905
ENCFF002CZW	POLR2A	9:6015394..6015803
ENCFF002CZW	POLR2A	9:6015394..6015819
ENCFF002CZY	POLR2A	9:6015422..6015937
ENCFF002DAE	POLR2A	9:6015524..6015834
ENCFF002DAH	POLR2A	9:6015499..6015783
ENCFF002DAK	POLR2A	9:6015496..6015996
ENCFF002DAS	POLR2A	9:6015384..6015860
ENCFF002DAV	POLR2A	9:6015332..6015876
ENCFF002DAY	POLR2A	9:6015467..6016103
ENCFF002DBB	POLR2A	9:6015618..6015818
ENCFF002DBB	POLR2A	9:6014872..6015072
ENCFF002DBE	POLR2A	9:6015487..6015860
ENCFF002DBO	POLR2A	9:6015527..6015699
ENCFF002DBP	POLR2A	9:6015566..6015663
ENCFF002DBQ	POLR2A	9:6015554..6015924
ENCFF002DBT	POLR2A	9:6015409..6015779

EST

45 EST(s) were mapped to retro_hsap_57 retrocopy

EST ID	Start	End	Identity	Match	Mis-match	Score
AA515855	6012496	6012904	99.8	407	1	406
AI187237	6012238	6012691	100	453	0	453
AL527784	6012299	6013279	98.6	883	12	867
AU137263	6012177	6012971	98.9	781	7	770
AW403296	6012505	6012838	100	333	0	333
BE004761	6013601	6014090	99.2	488	1	486
BE311758	6012745	6013559	99.2	799	4	782
BE708609	6012712	6013008	99.7	293	1	290
BG180616	6012830	6013521	98.7	680	3	663
BG260670	6012354	6012991	99.3	635	2	632
BM145818	6012689	6013148	98.7	445	4	436
BM456277	6012250	6012970	98	714	4	702
BM839500	6013450	6013801	100	351	0	351
BQ067780	6013826	6014490	98.1	658	6	649
BQ953326	6012234	6012977	99.1	735	1	731
BX327088	6012747	6013617	96.3	812	14	781
BX391578	6012923	6013770	97.2	803	16	770
BX436545	6012345	6013115	99.1	745	4	740
BX471142	6013029	6013451	99.8	421	1	420
DA010013	6012723	6013266	99.9	542	1	541
DA100319	6013593	6014140	100	547	0	547
DA114707	6014054	6014646	100	592	0	592
DA116213	6013590	6014180	100	590	0	590
DA125312	6013938	6014502	99.5	564	0	563
DA155272	6013262	6013831	100	569	0	569
DA195769	6013618	6014176	100	558	0	558
DA224982	6014357	6014923	100	566	0	566
DA248958	6014331	6014912	99.7	578	2	575
DA297861	6012692	6013264	99.2	572	0	570
DA394083	6014279	6014866	99.9	586	1	585
DA401152	6013812	6014372	100	560	0	560
DA500733	6013083	6013657	99.2	574	0	572
DA516052	6013472	6014024	99.1	552	0	550
DA547886	6012825	6013072	100	247	0	247
DA603626	6012379	6012843	100	464	0	464
DA805153	6013857	6014522	100	665	0	665
DA806690	6014328	6014889	100	561	0	561
DB137963	6013425	6013962	100	537	0	537
DB152826	6013662	6014224	100	562	0	562
DB233454	6014090	6014678	100	588	0	588
DB288409	6014399	6014951	100	552	0	552
DC420670	6012592	6013157	99.5	565	0	564
DC426897	6014018	6014510	98.4	480	4	472
H05851	6012281	6012670	95.6	380	0	369
N87727	6014499	6014783	98.3	277	4	269

TSS

TSS No.	TSS Name	TSS expression level (Expr) in TPM range:
		no expression	0 < Expr ≤ 1	1 < Expr ≤ 5	5 < Expr ≤ 10	Expr > 10
TSS #1	TSS_193522	58 libraries	14 libraries	203 libraries	478 libraries	1076 libraries

The graphical summary, for retro_hsap_57 TSS expression levels > 0 TPM .
TSS expression levels were studied across 1829 TSS-CAGE libraries, based on FANTOM5 data.
The expression values were visualized using beanplot. If you have any doubts, how to read it, read more in Kampstra P (2008)

Lab

retro_hsap_57 was not experimentally validated.

Homology

Retrocopy orthology:

Retrocopy retro_hsap_57 has 4 orthologous retrocopies within eutheria group .

Species	RetrogeneDB ID
Pan troglodytes	retro_ptro_49
Gorilla gorilla	retro_ggor_47
Mus musculus	retro_mmus_251
Rattus norvegicus	retro_rnor_240

---

Parental genes homology:

Parental genes homology involve 21 parental genes, and 25 retrocopies.

Species	Parental gene accession	Retrocopies number
Ailuropoda melanoleuca	ENSAMEG00000003784	1 retrocopy	retro_amel_3,
Bos taurus	ENSBTAG00000039374	1 retrocopy	retro_btau_104,
Canis familiaris	ENSCAFG00000005561	1 retrocopy	retro_cfam_452,
Choloepus hoffmanni	ENSCHOG00000006061	1 retrocopy	retro_chof_11,
Cavia porcellus	ENSCPOG00000004827	2 retrocopies	retro_cpor_265, retro_cpor_57,
Equus caballus	ENSECAG00000014808	1 retrocopy	retro_ecab_37,
Felis catus	ENSFCAG00000025657	1 retrocopy	retro_fcat_24,
Homo sapiens	ENSG00000065150	1 retrocopy	retro_hsap_57 ,
Gorilla gorilla	ENSGGOG00000008742	1 retrocopy	retro_ggor_47,
Loxodonta africana	ENSLAFG00000016190	1 retrocopy	retro_lafr_22,
Myotis lucifugus	ENSMLUG00000006500	1 retrocopy	retro_mluc_295,
Mus musculus	ENSMUSG00000030662	2 retrocopies	retro_mmus_251, retro_mmus_3683,
Nomascus leucogenys	ENSNLEG00000007831	2 retrocopies	retro_nleu_1610, retro_nleu_2482,
Oryctolagus cuniculus	ENSOCUG00000003898	1 retrocopy	retro_ocun_143,
Otolemur garnettii	ENSOGAG00000007570	1 retrocopy	retro_ogar_169,
Pongo abelii	ENSPPYG00000005458	1 retrocopy	retro_pabe_172,
Pan troglodytes	ENSPTRG00000005984	2 retrocopies	retro_ptro_49, retro_ptro_745,
Pteropus vampyrus	ENSPVAG00000004516	1 retrocopy	retro_pvam_8,
Rattus norvegicus	ENSRNOG00000010989	1 retrocopy	retro_rnor_240,
Sus scrofa	ENSSSCG00000009509	1 retrocopy	retro_sscr_24,
Ictidomys tridecemlineatus	ENSSTOG00000011164	1 retrocopy	retro_itri_32,

Population studies

Expression level across human populations :

Library	Retrogene expression
CEU_NA11831	21.96 RPM
CEU_NA11843	13.93 RPM
CEU_NA11930	28.52 RPM
CEU_NA12004	18.80 RPM
CEU_NA12400	18.10 RPM
CEU_NA12751	32.05 RPM
CEU_NA12760	19.36 RPM
CEU_NA12827	22.92 RPM
CEU_NA12872	26.89 RPM
CEU_NA12873	26.74 RPM
FIN_HG00183	29.54 RPM
FIN_HG00277	25.62 RPM
FIN_HG00315	24.29 RPM
FIN_HG00321	28.59 RPM
FIN_HG00328	24.60 RPM
FIN_HG00338	22.42 RPM
FIN_HG00349	21.94 RPM
FIN_HG00375	27.56 RPM
FIN_HG00377	19.79 RPM
FIN_HG00378	30.05 RPM
GBR_HG00099	30.28 RPM
GBR_HG00111	18.23 RPM
GBR_HG00114	26.43 RPM
GBR_HG00119	30.10 RPM
GBR_HG00131	33.31 RPM
GBR_HG00133	23.03 RPM
GBR_HG00134	27.41 RPM
GBR_HG00137	16.88 RPM
GBR_HG00142	28.76 RPM
GBR_HG00143	28.18 RPM
TSI_NA20512	12.72 RPM
TSI_NA20513	35.35 RPM
TSI_NA20518	27.23 RPM
TSI_NA20532	29.08 RPM
TSI_NA20538	32.39 RPM
TSI_NA20756	20.19 RPM
TSI_NA20765	32.41 RPM
TSI_NA20771	27.03 RPM
TSI_NA20786	19.01 RPM
TSI_NA20798	24.11 RPM
YRI_NA18870	22.75 RPM
YRI_NA18907	21.94 RPM
YRI_NA18916	23.81 RPM
YRI_NA19093	11.64 RPM
YRI_NA19099	20.82 RPM
YRI_NA19114	23.15 RPM
YRI_NA19118	20.12 RPM
YRI_NA19213	29.20 RPM
YRI_NA19214	26.86 RPM
YRI_NA19223	29.47 RPM

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Indel association:

No indels were associated with its genomic coordinates. Based on Kabza et al. 2015 (PubMed).